Structure of PDB 1yd2 Chain A Binding Site BS01

Receptor Information
>1yd2 Chain A (length=90) Species: 2336 (Thermotoga maritima) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MKEKIRKKILLAPEEPGVFIFKNKGVPIYIGKAKRLSNRLRSYLNPQTEK
VFRIGEEADELETIVVMNEREAFILEANLIKKYRPKYNVR
Ligand information
Ligand IDMN
InChIInChI=1S/Mn/q+2
InChIKeyWAEMQWOKJMHJLA-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mn+2]
CACTVS 3.341[Mn++]
FormulaMn
NameMANGANESE (II) ION
ChEMBL
DrugBankDB06757
ZINC
PDB chain1yd2 Chain A Residue 2002 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB1yd2 Structural insights into the first incision reaction during nucleotide excision repair
Resolution1.6 Å
Binding residue
(original residue number in PDB)		K4 E60 L61
Binding residue
(residue number reindexed from 1)		K4 E60 L61
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Biological Process
GO:0006289 nucleotide-excision repair

View graph for
Biological Process
External links
PDB RCSB:1yd2, PDBe:1yd2, PDBj:1yd2
PDBsum1yd2
PubMed15692561
UniProtQ9WYA3|UVRC_THEMA UvrABC system protein C (Gene Name=uvrC)

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