Structure of PDB 1y67 Chain A Binding Site BS01
Receptor Information
>1y67 Chain A (length=210) Species:
1299
(Deinococcus radiodurans) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
AAYTLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEGTEFAD
LPVEQLIQQLDRVPADKKGALRNNAGGHANHSMFWQIMGQGQGANQPSGE
LLDAINSAFGSFDAFKQKFEDAAKTRFGSGWAWLVVKDGKLDVVSTANQD
NPLMGEAIAGVSGTPILGVDVWEHAYYLNYQNRRPDYLAAFWNVVNWDEV
SKRYAAAKLV
Ligand information
Ligand ID
FE
InChI
InChI=1S/Fe/q+3
InChIKey
VTLYFUHAOXGGBS-UHFFFAOYSA-N
SMILES
Software
SMILES
ACDLabs 10.04
CACTVS 3.341
OpenEye OEToolkits 1.5.0
[Fe+3]
Formula
Fe
Name
FE (III) ION
ChEMBL
DrugBank
DB13949
ZINC
PDB chain
1y67 Chain A Residue 229 [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
1y67
Refinement of Macromolecular Structures by the Maximum-Likelihood Method
Resolution
1.853 Å
Binding residue
(original residue number in PDB)
H27 H81 D173 H177
Binding residue
(residue number reindexed from 1)
H27 H81 D170 H174
Annotation score
1
Enzymatic activity
Enzyme Commision number
1.15.1.1
: superoxide dismutase.
Gene Ontology
Molecular Function
GO:0004784
superoxide dismutase activity
GO:0016491
oxidoreductase activity
GO:0046872
metal ion binding
Biological Process
GO:0006801
superoxide metabolic process
GO:0019430
removal of superoxide radicals
Cellular Component
GO:0005737
cytoplasm
View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB
RCSB:1y67
,
PDBe:1y67
,
PDBj:1y67
PDBsum
1y67
PubMed
UniProt
Q9RUV2
|SODM_DEIRA Superoxide dismutase [Mn] (Gene Name=sodA)
[
Back to BioLiP
]