Structure of PDB 1wub Chain A Binding Site BS01

Receptor Information
>1wub Chain A (length=176) Species: 274 (Thermus thermophilus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MKWNLDPSHTSIDFKVRHMGIASVRGSLKVLSGSVETDEAGRPIQVEAVI
DAASIATGEPQRDGHLRSADFLHAEQYPEIRFVSTQIEPLGGNRYRIQGN
LTIRDITKPVTLEAEVSAPIKDPWGMQRVAASASGQINRKDWNLTWNQVL
ELGALLVGEEVKFNLEVEAVAPAPVA
Ligand information
Ligand IDOTP
InChIInChI=1S/C40H68O7P2/c1-33(2)17-10-18-34(3)19-11-20-35(4)21-12-22-36(5)23-13-24-37(6)25-14-26-38(7)27-15-28-39(8)29-16-30-40(9)31-32-46-49(44,45)47-48(41,42)43/h17,19,21,23,25,27,29,31H,10-16,18,20,22,24,26,28,30,32H2,1-9H3,(H,44,45)(H2,41,42,43)/b34-19+,35-21+,36-23+,37-25+,38-27+,39-29+,40-31+
InChIKeyIKKLDISSULFFQO-DJMILUHSSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0CC(=CCCC(=CCCC(=CCCC(=CCCC(=CCCC(=CCCC(=CCCC(=CCOP(=O)(O)OP(=O)(O)O)C)C)C)C)C)C)C)C
CACTVS 3.341CC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCO[P](O)(=O)O[P](O)(O)=O
OpenEye OEToolkits 1.5.0CC(=CCC/C(=C/CC/C(=C/CC/C(=C/CC/C(=C/CC/C(=C/CC/C(=C/CC/C(=C/CO[P@](=O)(O)OP(=O)(O)O)/C)/C)/C)/C)/C)/C)/C)C
CACTVS 3.341CC(C)=CCCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CO[P@@](O)(=O)O[P](O)(O)=O
ACDLabs 10.04O=P(O)(O)OP(=O)(O)OC/C=C(/CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)C)C
FormulaC40 H68 O7 P2
Name(2E,6E,10E,14E,18E,22E,26E)-3,7,11,15,19,23,27,31-OCTAMETHYLDOTRIACONTA-2,6,10,14,18,22,26,30-OCTAENYL TRIHYDROGEN DIPHOSPHATE;
OCTAPRENYL PYROPHOSPHATE
ChEMBL
DrugBank
ZINCZINC000008219112
PDB chain1wub Chain A Residue 1001 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB1wub Crystal structure of a novel polyisoprenoid-binding protein from Thermus thermophilus HB8
Resolution1.65 Å
Binding residue
(original residue number in PDB)
V16 H18 V24 L28 V35 A48 R62 H65 F82 A131 W146 V157 F163 L165
Binding residue
(residue number reindexed from 1)
V16 H18 V24 L28 V35 A48 R62 H65 F82 A131 W146 V157 F163 L165
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links