Structure of PDB 1wdt Chain A Binding Site BS01

Receptor Information
>1wdt Chain A (length=660) Species: 274 (Thermus thermophilus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEA
KLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAV
SAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKGGDYYALLEDLRSTLGP
ILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFR
QEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEAVRRGLLYPVALASG
EREIGVLPLLELILEALPSPTERFGDGPPLAKVFKVQVDPFMGQVAYLRL
YRGRLKPGDSLQSEAGQVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEG
LHRGMVLWQGEKPESEEVPFARLPDPNVPVALHPKGRTDEARLGEALRKL
LEEDPSLKLERQEETGELLLWGHGELHLATAKERLQDYGVEVEFSVPKVP
YRETIKKVAEGQGKYKKQTGGHGQYGDVWLRLEPASEYGFEWRITGGVIP
SKYQEAIEEGIKEAAKKGVLAGFPVMGFKAIVYNGSYHEVDSSDLAFQIA
ASLAFKKVMAEAHPVLLEPIYRLKVLAPQERVGDVLSDLQARRGRILGME
QEGALSVVHAEVPLAEVLEYYKALPGLTGGAGAYTLEFSHYAEVPPHLAQ
RIVQERAQEG
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain1wdt Chain A Residue 701 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB1wdt Crystal structure of ttk003000868 from Thermus thermophilus HB8
Resolution2.2 Å
Binding residue
(original residue number in PDB)		T23 T61
Binding residue
(residue number reindexed from 1)		T18 T56
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003746 translation elongation factor activity
GO:0003924 GTPase activity
GO:0005525 GTP binding
GO:0046872 metal ion binding
Biological Process
GO:0006414 translational elongation
GO:0032790 ribosome disassembly

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Molecular Function
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Biological Process
External links
PDB RCSB:1wdt, PDBe:1wdt, PDBj:1wdt
PDBsum1wdt
PubMed
UniProtQ5SI76

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