Structure of PDB 1vto Chain A Binding Site BS01

Receptor Information

>1vto Chain A (length=187) Species: 3702 (Arabidopsis thaliana) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

VDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVI
MRIREPKTTALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFK
DFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIV
LLIFVSGKIVITGAKMRDETYKAFENIYPVLSEFRKI

Ligand information

>1vto Chain C (length=14) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

gctataaaagggca

Receptor-Ligand Complex Structure

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Structure summary

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PDB	1vto 1.9 A Resolution Refined Structure of TBP Recognizing the Minor Groove of TATAAAAG
Resolution	1.9 Å
Binding residue (original residue number in PDB)	V29 A58 F74 S76 K78 V80 Q116 N117 F148 R154 T173
Binding residue (residue number reindexed from 1)	V18 A47 F63 S65 K67 V69 Q105 N106 F137 R143 T162

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0003677	DNA binding
GO:0005515	protein binding

	Biological Process
GO:0006352	DNA-templated transcription initiation

	Cellular Component
GO:0005634	nucleus

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Cellular Component

External links

PDB	RCSB:1vto, PDBe:1vto, PDBj:1vto
PDBsum	1vto
PubMed	7634103
UniProt	P28147\|TBP1_ARATH TATA-box-binding protein 1 (Gene Name=TBP1)

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