Structure of PDB 1vhe Chain A Binding Site BS01

Receptor Information
>1vhe Chain A (length=365) Species: 1423 (Bacillus subtilis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KLDETLTMLKDLTDAKGIPGNEREVRQVMKSYIEPFADEVTTDRLGSLIA
KKTGAENGPKIMIAGHLDEVGFMVTQITDKGFIRFQTVGGWWAQVMLAQR
VTIVTKKGEITGVIGSKPPHILSPEARKKSVEIKDMFIDIGASSREEALE
WGVLPGDMIVPHFEFTVMNNEKFLLAKAWDNRIGCAIAIDVLRNLQNTDH
PNIVYGVGTVQEEVGLRGAKTAAHTIQPDIAFGVDVGIAGDTPGISEKEA
QSKMGKGPQIIVYDASMVSHKGLRDAVVATAEEAGIPYQFDAIAGGGTDS
GAIHLTANGVPALSITIATRYIHTHAAMLHRDDYENAVKLITEVIKKLDR
KTVDEITYQEGGSHH
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain1vhe Chain A Residue 372 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB1vhe Structural analysis of a set of proteins resulting from a bacterial genomics project
Resolution1.9 Å
Binding residue
(original residue number in PDB)		H68 D182 D237
Binding residue
(residue number reindexed from 1)		H66 D180 D235
Annotation score4
Enzymatic activity
Enzyme Commision number 3.4.11.-
Gene Ontology
Molecular Function
GO:0004177 aminopeptidase activity
GO:0008237 metallopeptidase activity
GO:0046872 metal ion binding
Biological Process
GO:0006508 proteolysis

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:1vhe, PDBe:1vhe, PDBj:1vhe
PDBsum1vhe
PubMed16021622
UniProtP94521|YSDC_BACSU Putative aminopeptidase YsdC (Gene Name=ysdC)

[Back to BioLiP]