Structure of PDB 1rnv Chain A Binding Site BS01

Receptor Information

>1rnv Chain A (length=116) Species: 9913 (Bos taurus)

KETAAAKFERQHMDSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVC
SQKNVACKNGQTNCYQSYSTMSITDCRETGSSKYPNCAYKTTQANKHIIV
ACEGNPYVPVHFDASV

Ligand information

• Ligand ID: SO4
• InChI: InChI=1S/H2O4S/c1-5(2,3)4/h(H2,1,2,3,4)/p-2
• InChIKey: QAOWNCQODCNURD-UHFFFAOYSA-L
• SMILES:
  OpenEye OEToolkits 1.5.0: [O-]S(=O)(=O)[O-]
  CACTVS 3.341: [O-][S]([O-])(=O)=O
  ACDLabs 10.04: [O-]S([O-])(=O)=O
• Formula: O4 S
• Name: SULFATE ION
• DrugBank: DB14546
• PDB chain: 1rnv Chain A Residue 125

Receptor-Ligand Complex Structure

Structure summary

• PDB: 1rnv Refinement of the crystal structure of ribonuclease S. Comparison with and between the various ribonuclease A structures.
• Resolution: 1.6 Å
• Binding residue (original residue number in PDB): H12 H119 F120
• Binding residue (residue number reindexed from 1): H12 H111 F112
• Annotation score: 3

Enzymatic activity

• Catalytic site (original residue number in PDB): H12 K41 H119 F120 D121
• Catalytic site (residue number reindexed from 1): H12 K33 H111 F112 D113
• Enzyme Commision number: 4.6.1.18: pancreatic ribonuclease.

Gene Ontology

Molecular Function

• GO:0003676 nucleic acid binding
• GO:0004519 endonuclease activity
• GO:0004522 ribonuclease A activity
• GO:0004540 RNA nuclease activity
• GO:0005515 protein binding
• GO:0016829 lyase activity

Biological Process

• GO:0050830 defense response to Gram-positive bacterium

Cellular Component

• GO:0005576 extracellular region

External links

• PDB: RCSB:1rnv, PDBe:1rnv, PDBj:1rnv
• PDBsum: 1rnv
• PubMed: 1463719
• UniProt: P61823|RNAS1_BOVIN Ribonuclease pancreatic (Gene Name=RNASE1)