Structure of PDB 1qmf Chain A Binding Site BS01

Receptor Information
>1qmf Chain A (length=559) Species: 1313 (Streptococcus pneumoniae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TVPAKRGTIYDRNGVPIAEDATSPNRSYPNGQFASSFIGLAQLHENEDGS
KSLLGTSGMESSLNSILAGTDGIIRTMDGKDVYTTISSPLQSFMETQMDA
FQEKVKGKYMTATLVSAKTGEILATTQRPTFDADTKEGITEDFVWRDILY
QSNYEPGSTMKVMMLAAAIDNNTFPGGEVFNSSELKIADATIRDWDVNEG
LTGGRMMTFSQGFAHSSNVGMTLLEQKMGDATWLDYLNRFKFGVPTRFGL
TDEYAGQLPADNIVNIAQSSFGQGISVTQTQMIRAFTAIANDGVMLEPKF
ISAIYDPNDQTARKSQKEIVGNPVSKDAASLTRTNMVLVGTDPVYGTMYN
HSTGKPTVTVPGQNVALKSGTAQIADEKNGGYLVGLTDYIFSAVSMSPAE
NPDFILYVTVQQPEHYSGIQLGEFANPILERASAMKDSLNLQSPYPMPSV
KDISPGDLAEELRRNLVQPIVVGTGTKIKNSSAEEGKNLAPNQQVLILSD
KAEEVPDMYGWTKETAETLAKWLNIELEFQGSGSTVQKQDVRANTAIKDI
KKITLTLGD
Ligand information
Ligand IDCES
InChIInChI=1S/C15H17N3O7S/c1-7-6-26-13(17-9(7)14(20)21)11(15(22)23)16-12(19)10(18-24-2)8-4-3-5-25-8/h3-5,11,13,17H,6H2,1-2H3,(H,16,19)(H,20,21)(H,22,23)/b18-10-/t11-,13+/m0/s1
InChIKeyXTOFBDKWRLNHGR-LHLQUDMSSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0CC1=C(N[C@H](SC1)[C@@H](C(=O)O)NC(=O)/C(=N\OC)/c2ccco2)C(=O)O
CACTVS 3.341CON=C(C(=O)N[CH]([CH]1NC(=C(C)CS1)C(O)=O)C(O)=O)c2occc2
CACTVS 3.341CO\N=C(C(=O)N[C@@H]([C@@H]1NC(=C(C)CS1)C(O)=O)C(O)=O)\c2occc2
OpenEye OEToolkits 1.5.0CC1=C(NC(SC1)C(C(=O)O)NC(=O)C(=NOC)c2ccco2)C(=O)O
ACDLabs 10.04O=C(O)C(NC(=O)/C(=N\OC)c1occc1)C2SCC(=C(N2)C(=O)O)C
FormulaC15 H17 N3 O7 S
Name2-[CARBOXY-(2-FURAN-2-YL-2-METHOXYIMINO-ACETYLAMINO)-METHYL]-5-METHYL-3,6-DIHYDRO-2H-[1,3]THIAZINE-4-CARBOXYLIC ACID;
CEFUROXIME (INHIBITION FORM)
ChEMBL
DrugBank
ZINCZINC000103536170
PDB chain1qmf Chain A Residue 800 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB1qmf The Crystal Structure of the Penicillin Binding Protein 2X from Streptococcus Pneumoniae and its Acyl-Enzyme Form: Implication in Drug Resistance
Resolution2.8 Å
Binding residue
(original residue number in PDB)
S337 W374 S395 F450 Q452 S548 G549 T550 Q552
Binding residue
(residue number reindexed from 1)
S158 W195 S216 F271 Q273 S369 G370 T371 Q373
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0008658 penicillin binding
Biological Process
GO:0008360 regulation of cell shape
GO:0009252 peptidoglycan biosynthetic process
GO:0046677 response to antibiotic
GO:0051301 cell division
GO:0071555 cell wall organization
Cellular Component
GO:0005886 plasma membrane

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:1qmf, PDBe:1qmf, PDBj:1qmf
PDBsum1qmf
PubMed10860753
UniProtP14677|PBPX_STRPN Penicillin-binding protein 2x (Gene Name=pbpX)

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