Structure of PDB 1q1y Chain A Binding Site BS01

Receptor Information

>1q1y Chain A (length=186) Species: 1280 (Staphylococcus aureus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

MLTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIA
KRYGLRSGVGLAAPQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSV
QEAYLPTGEGCLSVDDNVAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAI
VFQHEIDHLNGVMFYDHIDKDHPLQPHTDAVEVLEH

Ligand information

Ligand ID

InChI

InChI=1S/Zn/q+2

InChIKey

PTFCDOFLOPIGGS-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Zn++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Zn+2]

Formula

Name

ZINC ION

PDB chain

1q1y Chain A Residue 350 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	1q1y Crystal structure of peptide deformylase from Staphylococcus aureus in complex with actinonin, a naturally occurring antibacterial agent
Resolution	1.9 Å
Binding residue (original residue number in PDB)	A111 H154 H158
Binding residue (residue number reindexed from 1)	A111 H154 H158
Annotation score	1

Enzymatic activity

Catalytic site (original residue number in PDB)	G60 Q65 C111 L112 H154 E155 H158
Catalytic site (residue number reindexed from 1)	G60 Q65 C111 L112 H154 E155 H158
Enzyme Commision number	3.5.1.88: peptide deformylase.

Gene Ontology

	Molecular Function
GO:0016787	hydrolase activity
GO:0042586	peptide deformylase activity
GO:0046872	metal ion binding

	Biological Process
GO:0006412	translation
GO:0018206	peptidyl-methionine modification

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Molecular Function

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Biological Process

External links

PDB	RCSB:1q1y, PDBe:1q1y, PDBj:1q1y
PDBsum	1q1y
PubMed	15382235
UniProt	P68826\|DEF_STAAU Peptide deformylase (Gene Name=def)

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