Structure of PDB 1pd0 Chain A Binding Site BS01

Receptor Information
>1pd0 Chain A (length=734) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYI
RSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVRCR
RCRSYMNPFVTFIEQGRRWRCNFCRLANDVPMQMDQPKSRYDRNEIKCAV
MEYMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIP
NHDERTRISILCVDNAIHYFKIPLDSENINMMDIADLEEPNSMVVSLKAC
RQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGVGGKIIVVSGTL
PNLGIGKLQRDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFT
AGQTHFYPGFSGKNPNDIVKFSTEFAKHISMDFCMETVMRARGSTGLRMS
RFYGHFFNRSSDLCAFSTMPRDQSYLFEVNVDESIMADYCYVQVAVLLSL
NNSQRRIRIITLAMPTTESLAEVYASADQLAIASFYNSKAVEKALNSSLD
DARVLINKSVQDILATYKKEIVGGAPLRLCANLRMFPLLMHSLTKHMAFR
SGIVPSDHRASALNNLESLPLKYLIKNIYPDVYSLHDMADEAGLPVGTIV
LPQPINATSSLFERYGLYLIDNGNELFLWMGGDAVPALVFDVFGTQDIFD
IPIGKQEIPVVENSEFNQRVRNIINQLRNHDDVITYQSLYIVRGAAREVA
TLRLWASSTLVEDKILNNESYREFLQIMKARISK
Ligand information
>1pd0 Chain B (length=10) Species: 559292 (Saccharomyces cerevisiae S288C) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
TYNNSNPFMT
Receptor-Ligand Complex Structure
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PDB1pd0 SNARE selectivity of the COPII coat.
Resolution2.6 Å
Binding residue
(original residue number in PDB)		E504 D505 Y506 F525 P527 G528 M721 R724 D731 H732 K837 T893 L896 W897
Binding residue
(residue number reindexed from 1)		E335 D336 Y337 F356 P358 G359 M547 R550 D557 H558 K655 T701 L704 W705
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0008270 zinc ion binding
Biological Process
GO:0006886 intracellular protein transport
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport
Cellular Component
GO:0030127 COPII vesicle coat

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:1pd0, PDBe:1pd0, PDBj:1pd0
PDBsum1pd0
PubMed12941276
UniProtP40482|SEC24_YEAST Protein transport protein SEC24 (Gene Name=SEC24)

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