Structure of PDB 1owz Chain A Binding Site BS01

Receptor Information

>1owz Chain A (length=162) Species: 10665 (Tequatrovirus T4)

MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAI
GRNCNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCAAI
NQVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVI
TTFRTGTWDAYK

Ligand information

• Ligand ID: 4FA
• InChI: InChI=1S/C8H9FO/c9-8-3-1-7(2-4-8)5-6-10/h1-4,10H,5-6H2
• InChIKey: MWUVGXCUHWKQJE-UHFFFAOYSA-N
• SMILES:
  OpenEye OEToolkits 1.5.0: c1cc(ccc1CCO)F
  ACDLabs 10.04: Fc1ccc(cc1)CCO
  CACTVS 3.341: OCCc1ccc(F)cc1
• Formula: C8 H9 F O
• Name: 4-FLUOROPHENETHYL ALCOHOL
• DrugBank: DB03669
• ZINC: ZINC000000388332
• PDB chain: 1owz Chain A Residue 409

Receptor-Ligand Complex Structure

Structure summary

• PDB: 1owz Testing a Flexible-receptor Docking Algorithm in a Model Binding Site
• Resolution: 1.9 Å
• Binding residue (original residue number in PDB): I78 A99 Q102 V111 L118
• Binding residue (residue number reindexed from 1): I78 A99 Q102 V111 L118
• Annotation score: 1

Enzymatic activity

• Catalytic site (original residue number in PDB): E11 D20
• Catalytic site (residue number reindexed from 1): E11 D20
• Enzyme Commision number: 3.2.1.17: lysozyme.

Gene Ontology

Molecular Function

• GO:0003796 lysozyme activity
• GO:0016798 hydrolase activity, acting on glycosyl bonds

Biological Process

• GO:0009253 peptidoglycan catabolic process
• GO:0016998 cell wall macromolecule catabolic process
• GO:0031640 killing of cells of another organism
• GO:0042742 defense response to bacterium
• GO:0044659 viral release from host cell by cytolysis

Cellular Component

• GO:0030430 host cell cytoplasm

External links

• PDB: RCSB:1owz, PDBe:1owz, PDBj:1owz
• PDBsum: 1owz
• PubMed: 15046985
• UniProt: P00720|ENLYS_BPT4 Endolysin (Gene Name=E)