Structure of PDB 1ov5 Chain A Binding Site BS01

Receptor Information
>1ov5 Chain A (length=162) Species: 10665 (Tequatrovirus T4) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAI
GRNCNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCAAI
NQVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVI
TTFRTGTWDAYK
Ligand information
Ligand ID2LP
InChIInChI=1S/C9H10O/c1-2-5-8-6-3-4-7-9(8)10/h2-4,6-7,10H,1,5H2
InChIKeyQIRNGVVZBINFMX-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C=CCc1ccccc1O
CACTVS 3.341Oc1ccccc1CC=C
ACDLabs 10.04Oc1ccccc1C/C=C
FormulaC9 H10 O
Name2-ALLYLPHENOL
ChEMBLCHEMBL1229950
DrugBankDB02534
ZINCZINC000001576883
PDB chain1ov5 Chain A Residue 403 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB1ov5 Testing a Flexible-receptor Docking Algorithm in a Model Binding Site
Resolution2.1 Å
Binding residue
(original residue number in PDB)		I78 A99 Q102 V103 V111 L118
Binding residue
(residue number reindexed from 1)		I78 A99 Q102 V103 V111 L118
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) E11 D20
Catalytic site (residue number reindexed from 1) E11 D20
Enzyme Commision number 3.2.1.17: lysozyme.
Gene Ontology
Molecular Function
GO:0003796 lysozyme activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
Biological Process
GO:0009253 peptidoglycan catabolic process
GO:0016998 cell wall macromolecule catabolic process
GO:0031640 killing of cells of another organism
GO:0042742 defense response to bacterium
GO:0044659 viral release from host cell by cytolysis
Cellular Component
GO:0030430 host cell cytoplasm

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Biological Process
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Cellular Component
External links
PDB RCSB:1ov5, PDBe:1ov5, PDBj:1ov5
PDBsum1ov5
PubMed15046985
UniProtP00720|ENLYS_BPT4 Endolysin (Gene Name=E)

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