Structure of PDB 1onk Chain A Binding Site BS01

Receptor Information
>1onk Chain A (length=249) Species: 3972 (Viscum album) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
YERLRLRVTHQTTGEEYFRFITLLRDYVSSGSFSNEIPLLRQSTIPVSDA
QRFVLVELTNQGQDSVTAAIDVTNAYVVAYQAGDQSYFLRDAPRGAETHL
FTGTTRSSLPFNGSYPDLERYAGHRDQIPLGIDQLIQSVTALRFPGGSTR
TQARSILILIQMISEAARFNPILWRYRQYINSGASFLPDVYMLELETSWG
QQSTQVQHSTDGVFNNPIRLAIPPGNFVTLTNVRDVIASLAIMLFVCGE
Ligand information
Ligand IDAZI
InChIInChI=1S/N3/c1-3-2/q-1
InChIKeyIVRMZWNICZWHMI-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
CACTVS 3.341
OpenEye OEToolkits 1.5.0		[N-]=[N+]=[N-]
FormulaN3
NameAZIDE ION
ChEMBLCHEMBL79455
DrugBank
ZINC
PDB chain1onk Chain A Residue 4010 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB1onk Mistletoe lectin I from viscum album
Resolution2.1 Å
Binding residue
(original residue number in PDB)		G83 D84 R143
Binding residue
(residue number reindexed from 1)		G83 D84 R143
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) V77 E165 R168
Catalytic site (residue number reindexed from 1) V77 E165 R168
Enzyme Commision number 3.2.2.22: rRNA N-glycosylase.
Gene Ontology
Molecular Function
GO:0030598 rRNA N-glycosylase activity
Biological Process
GO:0017148 negative regulation of translation

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Molecular Function
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Biological Process
External links
PDB RCSB:1onk, PDBe:1onk, PDBj:1onk
PDBsum1onk
PubMed
UniProtP81446|ML1_VISAL Beta-galactoside-specific lectin 1

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