Structure of PDB 1oee Chain A Binding Site BS01

Receptor Information

>1oee Chain A (length=185) Species: 562 (Escherichia coli)

PLTEVEQKAANGVFDDANVQNRTLSDWDGVWQSVYPLLQSGKLDPVFQKK
ADADKTKTFAEIKDYYHKGYATDIEMIGIEDGIVEFHRNNETTSCKYDYD
GYKILTYKSGKKGVRYLFECKDPESKAPKYIQFSDHIIAPRKSSHFHIFM
GNDSQQSLLNEMENWPTYYPYQLSSEEVVEEMMSH

Ligand information

• Ligand ID: CD
• InChI: InChI=1S/Cd/q+2
• InChIKey: WLZRMCYVCSSEQC-UHFFFAOYSA-N
• SMILES:
  CACTVS 3.341: [Cd++]
  ACDLabs 10.04
  OpenEye OEToolkits 1.5.0: [Cd+2]
• Formula: Cd
• Name: CADMIUM ION
• PDB chain: 1oee Chain A Residue 1194

Receptor-Ligand Complex Structure

Structure summary

• PDB: 1oee Yoda from Escherichia Coli is a Metal-Binding, Lipocalin-Like Protein
• Resolution: 2.1 Å
• Binding residue (original residue number in PDB): H144 H153 H155
• Binding residue (residue number reindexed from 1): H136 H145 H147
• Annotation score: 3

Gene Ontology

Molecular Function

• GO:0008270 zinc ion binding
• GO:0046870 cadmium ion binding
• GO:0046872 metal ion binding

Biological Process

• GO:0006882 intracellular zinc ion homeostasis
• GO:0034224 cellular response to zinc ion starvation
• GO:0070301 cellular response to hydrogen peroxide
• GO:0071276 cellular response to cadmium ion

Cellular Component

• GO:0005737 cytoplasm
• GO:0005829 cytosol
• GO:0030288 outer membrane-bounded periplasmic space
• GO:0042597 periplasmic space

External links

• PDB: RCSB:1oee, PDBe:1oee, PDBj:1oee
• PDBsum: 1oee
• PubMed: 12909634
• UniProt: P76344|ZINT_ECOLI Metal-binding protein ZinT (Gene Name=zinT)