Structure of PDB 1o75 Chain A Binding Site BS01

Receptor Information
>1o75 Chain A (length=399) Species: 160 (Treponema pallidum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ETSYGYATLSYADYWAGELGQSRDVLLADLDAGMFDAVSRATHGHGAFRQ
QFQYAVEVLGEKVLSKQETEDSRGRKKWEYETDPSVTKMVRASASFQDLG
EDGEIKFEAVEGAVALADRASSFMVDSEEYKITNVKVHGMKFVPVAVPHE
LKGIAKEKFHFVEDSRVTENTNGLKTMLTEDSFSARKVSSMESPHDLVVD
TVGTGYHSRFGSDAEASVMLKRADGSELSHREFIDYVMNFNTVRYDYYGD
DASYTNLMASYGTKHSADSWWKTGRVPRISCGINYGFDRFKGSGPGYYRL
TLIANGYRDVVADVRFLPKYEGNIDIGLKGKVLTIGGADAETLMDAAVDV
FADGQPKLVSDQAVSLGQNVLSADFTPGTEYTVEVRFKEFGSVRAKVVA
Ligand information
Ligand IDPDX
InChIInChI=1S/C6H12O12S2/c7-1-2-3(8)4(17-19(10,11)12)5(6(9)16-2)18-20(13,14)15/h2-9H,1H2,(H,10,11,12)(H,13,14,15)/t2-,3-,4+,5-,6+/m1/s1
InChIKeyORUZACWROKWTRH-DVKNGEFBSA-N
SMILES
SoftwareSMILES
CACTVS 3.341OC[CH]1O[CH](O)[CH](O[S](O)(=O)=O)[CH](O[S](O)(=O)=O)[CH]1O
CACTVS 3.341OC[C@H]1O[C@H](O)[C@H](O[S](O)(=O)=O)[C@@H](O[S](O)(=O)=O)[C@@H]1O
OpenEye OEToolkits 1.5.0C(C1C(C(C(C(O1)O)OS(=O)(=O)O)OS(=O)(=O)O)O)O
OpenEye OEToolkits 1.5.0C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)OS(=O)(=O)O)OS(=O)(=O)O)O)O
ACDLabs 10.04O=S(=O)(O)OC1C(O)C(OC(O)C1OS(=O)(=O)O)CO
FormulaC6 H12 O12 S2
Name2,3-di-O-sulfo-alpha-D-glucopyranose;
2,3-di-O-sulfo-alpha-D-glucose;
2,3-di-O-sulfo-D-glucose;
2,3-di-O-sulfo-glucose
ChEMBL
DrugBankDB02879
ZINCZINC000031976877
PDB chain1o75 Chain C Residue 1 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB1o75 Crystal structure of the 47-kDa lipoprotein of Treponema pallidum reveals a novel penicillin-binding protein.
Resolution1.95 Å
Binding residue
(original residue number in PDB)
K287 G289 R290 V291
Binding residue
(residue number reindexed from 1)
K272 G274 R275 V276
Annotation score1
Enzymatic activity
Enzyme Commision number 3.4.-.-
Gene Ontology
Molecular Function
GO:0008233 peptidase activity
Biological Process
GO:0006508 proteolysis
Cellular Component
GO:0005886 plasma membrane

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:1o75, PDBe:1o75, PDBj:1o75
PDBsum1o75
PubMed12196546
UniProtP29723|TA47_TREPA Putative DD-carboxypeptidase TP_0574 (Gene Name=TP_0574)

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