Structure of PDB 1nov Chain A Binding Site BS01

Receptor Information
>1nov Chain A (length=309) Species: 12288 (Nodamura virus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NMLKMSAPGLDFLKCAFASPDFSTDPGKGIPDKFQGLVLPKKHCLTQSIT
FTPGKQTMLLVAPIPGIACLKAEANVGASFSGVPLASVEFPGFDQLFGTS
ATDTAANVTAFRYASMAAGVYPTSNLMQFAGSIQVYKIPLKQVLNSYSQT
VATVPPTNLAQNTIAIDGLEALDALPNNNYSGSFIEGCYSQSVCNEPEFE
FHPIMEGYASVPPANVTNAQASMFTNLTFSGARYTGLGDMDAIAILVTTP
TGAVNTAVLKVWACVEYRPNPNSTLYEFARESPANDEYALAAYRKIARDI
PIAVACKDN
Ligand information
>1nov Chain D (length=20) Species: 12288 (Nodamura virus) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ATFWERVRSILKSGLNFAST
Receptor-Ligand Complex Structure
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PDB1nov Resolution of space-group ambiguity and structure determination of nodamura virus to 3.3 A resolution from pseudo-R32 (monoclinic) crystals.
Resolution3.5 Å
Binding residue
(original residue number in PDB)		K68 F71 A72 D75 F76 Q242 Y342 K349 I354 V358 D362 N363
Binding residue
(residue number reindexed from 1)		K14 F17 A18 D21 F22 Q191 Y288 K295 I300 V304 D308 N309
Enzymatic activity
Enzyme Commision number 3.4.23.44: nodavirus endopeptidase.
Gene Ontology
Molecular Function
GO:0004190 aspartic-type endopeptidase activity
Biological Process
GO:0006508 proteolysis

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Molecular Function
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Biological Process
External links
PDB RCSB:1nov, PDBe:1nov, PDBj:1nov
PDBsum1nov
PubMed15299863
UniProtP12871|CAPSD_NODAM Capsid protein alpha (Gene Name=alpha)

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