Structure of PDB 1n2t Chain A Binding Site BS01
Receptor Information
>1n2t Chain A (length=385) Species:
1147
(Synechocystis sp. PCC 6714) [
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TPDRHQFPGLANKTYFNFGGQGILPTVALEAITAMYGYLQENGPFSIAAN
QHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWHQGDEI
LLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPK
TRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPL
DFSRLEVDYYAFTGHAWFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYG
AKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQ
RSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSPLGHRAIVQKLEEQRI
YLRTIADPDCIRACCHYITDEEEINHLLARLADFG
Ligand information
Ligand ID
PLP
InChI
InChI=1S/C8H10NO6P/c1-5-8(11)7(3-10)6(2-9-5)4-15-16(12,13)14/h2-3,11H,4H2,1H3,(H2,12,13,14)
InChIKey
NGVDGCNFYWLIFO-UHFFFAOYSA-N
SMILES
Software
SMILES
CACTVS 3.341
Cc1ncc(CO[P](O)(O)=O)c(C=O)c1O
OpenEye OEToolkits 1.5.0
Cc1c(c(c(cn1)COP(=O)(O)O)C=O)O
ACDLabs 10.04
O=P(O)(O)OCc1cnc(c(O)c1C=O)C
Formula
C8 H10 N O6 P
Name
PYRIDOXAL-5'-PHOSPHATE;
VITAMIN B6 Phosphate
ChEMBL
CHEMBL82202
DrugBank
DB00114
ZINC
ZINC000001532514
PDB chain
1n2t Chain A Residue 3001 [
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Receptor-Ligand Complex Structure
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PDB
1n2t
Snapshots of the Cystine Lyase "C-DES" during Catalysis: Studies in Solution and in the Crystalline State
Resolution
2.0 Å
Binding residue
(original residue number in PDB)
N87 V88 T89 H114 D197 A199
Binding residue
(residue number reindexed from 1)
N80 V81 T82 H107 D190 A192
Annotation score
4
Enzymatic activity
Catalytic site (original residue number in PDB)
H114 D197 A199 Q200 A223 R360
Catalytic site (residue number reindexed from 1)
H107 D190 A192 Q193 A216 R353
Enzyme Commision number
4.4.1.-
Gene Ontology
Molecular Function
GO:0016829
lyase activity
View graph for
Molecular Function
External links
PDB
RCSB:1n2t
,
PDBe:1n2t
,
PDBj:1n2t
PDBsum
1n2t
PubMed
12386155
UniProt
Q9ZHG9
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