Structure of PDB 1n1t Chain A Binding Site BS01
Receptor Information
>1n1t Chain A (length=628) Species:
5698
(Trypanosoma rangeli) [
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AASLAPGSSRVELFKRKNSTVPFEESNGTIRERVVHSFRIPTIVNVDGVM
VAIADARYETSFDNSFIETAVKYSVDDGATWNTQIAIKNSRASSVSRVMD
ATVIVKGNKLYILVGSFNKTRNSWTQHRDGSDWEPLLVVGEVTKSAANGK
TTATISWGKPVSLKPLFPAEFDGILTKEFVGGVGAAIVASNGNLVYPVQI
ADMGGRVFTKIMYSEDDGNTWKFAEGRSKFGCSEPAVLEWEGKLIINNRV
DGNRRLVYESSDMGKTWVEALGTLSHVWTNSPTSNQQDCQSSFVAVTIEG
KRVMLFTHPLNLKGRWMRDRLHLWMTDNQRIFDVGQISIGDENSGYSSVL
YKDDKLYSLHEINTNDVYSLVFVRLIGELQLMKSVVRTWKEEDNHLASIC
TPVVPAGCGAAVPTAGLVGFLSHSANGSVWEDVYRCVDANVANAERVPNG
LKFNGVGGGAVWPVARQGQTRRYQFANYRFTLVATVTIDELPKGTSPLLG
AGLEGPGDAKLLGLSYDKNRQWRPLYGAAPASPTGSWELHKKYHVVLTMA
DRQGSVYVDGQPLAGSGNTVVRGATLPDISHFYIGGPRSKGAPTDSRVTV
TNVVLYNRRLNSSEIRTLFLSQDMIGTD
Ligand information
Ligand ID
DAN
InChI
InChI=1S/C11H17NO8/c1-4(14)12-8-5(15)2-7(11(18)19)20-10(8)9(17)6(16)3-13/h2,5-6,8-10,13,15-17H,3H2,1H3,(H,12,14)(H,18,19)/t5-,6+,8+,9+,10+/m0/s1
InChIKey
JINJZWSZQKHCIP-UFGQHTETSA-N
SMILES
Software
SMILES
ACDLabs 10.04
O=C(O)C=1OC(C(O)C(O)CO)C(NC(=O)C)C(O)C=1
OpenEye OEToolkits 1.5.0
CC(=O)NC1C(C=C(OC1C(C(CO)O)O)C(=O)O)O
OpenEye OEToolkits 1.5.0
CC(=O)N[C@@H]1[C@H](C=C(O[C@H]1[C@@H]([C@@H](CO)O)O)C(=O)O)O
CACTVS 3.341
CC(=O)N[C@@H]1[C@@H](O)C=C(O[C@H]1[C@H](O)[C@H](O)CO)C(O)=O
CACTVS 3.341
CC(=O)N[CH]1[CH](O)C=C(O[CH]1[CH](O)[CH](O)CO)C(O)=O
Formula
C11 H17 N O8
Name
2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID;
Neu5Ac2en
ChEMBL
CHEMBL96712
DrugBank
DB03991
ZINC
ZINC000004096465
PDB chain
1n1t Chain A Residue 700 [
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Receptor-Ligand Complex Structure
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PDB
1n1t
The high resolution structures of free and inhibitor-bound Trypanosoma rangeli sialidase and its comparison with T. cruzi trans-sialidase
Resolution
1.6 Å
Binding residue
(original residue number in PDB)
R39 D63 M99 D100 W124 R249 R318 Y346
Binding residue
(residue number reindexed from 1)
R39 D63 M99 D100 W124 R249 R318 Y346
Annotation score
1
Binding affinity
PDBbind-CN
: -logKd/Ki=3.85,Ki=140uM
Enzymatic activity
Enzyme Commision number
3.2.1.18
: exo-alpha-sialidase.
Gene Ontology
Molecular Function
GO:0004308
exo-alpha-sialidase activity
GO:0016798
hydrolase activity, acting on glycosyl bonds
Biological Process
GO:0006689
ganglioside catabolic process
GO:0009313
oligosaccharide catabolic process
Cellular Component
GO:0005737
cytoplasm
GO:0016020
membrane
GO:0043231
intracellular membrane-bounded organelle
View graph for
Molecular Function
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Biological Process
View graph for
Cellular Component
External links
PDB
RCSB:1n1t
,
PDBe:1n1t
,
PDBj:1n1t
PDBsum
1n1t
PubMed
12507479
UniProt
O44049
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