Structure of PDB 1m8v Chain A Binding Site BS01
Receptor Information
>1m8v Chain A (length=72) Species:
29292
(Pyrococcus abyssi) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
AERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDG
EVVKRYGKIVIRGDNVLAISPT
Ligand information
>1m8v Chain O (length=6) [
Search RNA sequence
] [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
uuuuuu
......
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
1m8v
Crystal Structure of Pyrococcus abyssii Sm core and its Complex with RNA: Common Features of RNA-binding in Archaea and Eukarya
Resolution
2.6 Å
Binding residue
(original residue number in PDB)
R104 L106 D107 H110 Y134
Binding residue
(residue number reindexed from 1)
R3 L5 D6 H9 Y33
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0003723
RNA binding
Biological Process
GO:0000398
mRNA splicing, via spliceosome
Cellular Component
GO:0120114
Sm-like protein family complex
GO:1990904
ribonucleoprotein complex
View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB
RCSB:1m8v
,
PDBe:1m8v
,
PDBj:1m8v
PDBsum
1m8v
PubMed
12409299
UniProt
Q9V0Y8
|RUXX_PYRAB Putative snRNP Sm-like protein (Gene Name=PYRAB06500)
[
Back to BioLiP
]