Structure of PDB 1jod Chain A Binding Site BS01

Receptor Information
>1jod Chain A (length=160) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DGPQKQQLEMPLVLDQDLTQQMRLRVESLKQRGEKKQDGEKLIRPAESVY
RLDFIQQQKLQFDHWNVVLDKPGKVTITGTSQNWTPDLTNLMTRQLLDPA
AIFWRKEDSDAMDWNEADALEFGERLSDLAKIRKVMYFLITFGEGVEPAN
LKASVVFNQL
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain1jod Chain A Residue 304 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB1jod The crystal structure of the olfactory marker protein at 2.3 A resolution.
Resolution3.2 Å
Binding residue
(original residue number in PDB)		D118 D120
Binding residue
(residue number reindexed from 1)		D15 D17
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0042277 peptide binding
Biological Process
GO:0007165 signal transduction
GO:0007608 sensory perception of smell
GO:0022008 neurogenesis
Cellular Component
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0030424 axon
GO:0043025 neuronal cell body

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:1jod, PDBe:1jod, PDBj:1jod
PDBsum1jod
PubMed12054872
UniProtQ64288|OMP_MOUSE Olfactory marker protein (Gene Name=Omp)

[Back to BioLiP]