Structure of PDB 1j0n Chain A Binding Site BS01

Receptor Information
>1j0n Chain A (length=752) Species: 84635 (Bacillus sp. GL1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SDEFDALRIKWATLLTGGPALDPADSDIAARTDKLAQDANDYWEDMDLSS
SRTYIWYALRGNGTSDNVNAVYERLRTMALAATTVGSSLYGNADLKEDIL
DALDWLYVNSYNSTRSRSAYNWWHWQLGIPMSLNDTAVLLYDDISAARMA
TYMDTIDYFTPSIGLTGANRAWQAIVVGVRAVIVKDAVKLAAARNGLSGT
GIFPYATGGDGFYADGSFVQHTTFAYTGGYGSSVLETTANLMYLLSGSTW
SVSDPNQSNVWQWIYEAYRPLLYKGAMMDMVRGREISRSYAQDHAVGHGI
VASIVRLAQFAPAPHAAAFKQIAKRVIQEDTFSSFYGDVSTDTIRLAKAI
VDDPSIAPAAAPNLYKQYAAMDRAVLQRPGFALGLALYSTRISSYESINS
ENGRGWYTGAGATYLYNQDLAQYSEDYWPTVDAYRIPGTTVASGTPIASG
TGTSSWTGGVSLAGQYGASGMDLSYGAYNLSARKSWFMFDDEIVALGSGI
SSTAGIPIETVVDNRKLNGAGDNAWTANGAALSTGLGVAQTLTGVNWVHL
AGNTADGSDIGYYFPGGATLQTKREARTGTWKQINNRPATPSTAVTRNYE
TMWIDHGTNPSGASYGYVLLPNKTSAQVGAYAADPAIEIVVNTSGVQSVK
EKTLGLVGANFWTDTTQTADLITSNKKASVMTREIADERLEASVSDPTQA
NNGTIAIELARSAEGYSADPGITVTQLAPTIKFTVNVNGAKGKSFHASFQ
LG
Ligand information
Ligand IDCEG
InChIInChI=1S/C9H14O8/c1-9(8(13)14)15-2-3-6(17-9)4(10)5(11)7(12)16-3/h3-7,10-12H,2H2,1H3,(H,13,14)/t3-,4-,5-,6-,7-,9+/m1/s1
InChIKeyQVVFNJUJKXWFAU-GLPGPYIRSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0CC1(OCC2C(O1)C(C(C(O2)O)O)O)C(=O)O
OpenEye OEToolkits 1.5.0C[C@@]1(OC[C@@H]2[C@@H](O1)[C@@H]([C@H]([C@@H](O2)O)O)O)C(=O)O
CACTVS 3.341C[C]1(OC[CH]2O[CH](O)[CH](O)[CH](O)[CH]2O1)C(O)=O
CACTVS 3.341C[C@@]1(OC[C@H]2O[C@@H](O)[C@H](O)[C@@H](O)[C@@H]2O1)C(O)=O
ACDLabs 10.04O=C(O)C1(OCC2OC(O)C(O)C(O)C2O1)C
FormulaC9 H14 O8
Name4,6-O-[(1S)-1-carboxyethylidene]-beta-D-glucopyranose;
4,6-O-(1-CARBOXYETHYLIDENE)-BETA-D-GLUCOSE;
4,6-O-[(1S)-1-carboxyethylidene]-beta-D-glucose;
4,6-O-[(1S)-1-carboxyethylidene]-D-glucose;
4,6-O-[(1S)-1-carboxyethylidene]-glucose
ChEMBL
DrugBank
ZINCZINC000058633126
PDB chain1j0n Chain A Residue 780 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB1j0n Crystal Structure of Bacillus sp. GL1 Xanthan Lyase, Which Acts on the Side Chains of Xanthan.
Resolution2.4 Å
Binding residue
(original residue number in PDB)
W148 Y255 R309 R313 Y315 R612
Binding residue
(residue number reindexed from 1)
W123 Y230 R284 R288 Y290 R587
Annotation score4
Enzymatic activity
Catalytic site (original residue number in PDB) N196 H246 Y255 R309 E421
Catalytic site (residue number reindexed from 1) N169 H221 Y230 R284 E396
Enzyme Commision number 4.2.2.12: xanthan lyase.
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0016829 lyase activity
GO:0030246 carbohydrate binding
Biological Process
GO:0005975 carbohydrate metabolic process
Cellular Component
GO:0005576 extracellular region

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:1j0n, PDBe:1j0n, PDBj:1j0n
PDBsum1j0n
PubMed12475987
UniProtQ9AQS0|XANLY_BACGL Xanthan lyase (Gene Name=xly)

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