Structure of PDB 1hzz Chain A Binding Site BS01
Receptor Information
>1hzz Chain A (length=362) Species:
1085
(Rhodospirillum rubrum) [
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MKIAIPKERRPGEDRVAISPEVVKKLVGLGFEVIVEQGAGVGASITDDAL
TAAGATIASTAAQALSQADVVWKVQRPMTAEEGTDEVALIKEGAVLMCHL
GALTNRPVVEALTKRKITAYAMELMPRISRAQSMDILSSQSNLAGYRAVI
DGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMA
TDVRAATKEQVESLGGKFITVDAGGYAKEMGEEFRKKQAEAVLKELVKTD
IAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKI
VVKHGVKIVGHTNVPSRVAADASPLFAKNLLNFLTPHVDKDTKTLVMKLE
DETVSGTCVTRD
Ligand information
Ligand ID
NAD
InChI
InChI=1S/C21H27N7O14P2/c22-17-12-19(25-7-24-17)28(8-26-12)21-16(32)14(30)11(41-21)6-39-44(36,37)42-43(34,35)38-5-10-13(29)15(31)20(40-10)27-3-1-2-9(4-27)18(23)33/h1-4,7-8,10-11,13-16,20-21,29-32H,5-6H2,(H5-,22,23,24,25,33,34,35,36,37)/t10-,11-,13-,14-,15-,16-,20-,21-/m1/s1
InChIKey
BAWFJGJZGIEFAR-NNYOXOHSSA-N
SMILES
Software
SMILES
CACTVS 3.341
NC(=O)c1ccc[n+](c1)[C@@H]2O[C@H](CO[P]([O-])(=O)O[P@](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O
OpenEye OEToolkits 1.5.0
c1cc(c[n+](c1)C2C(C(C(O2)COP(=O)([O-])OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O)O)O)C(=O)N
CACTVS 3.341
NC(=O)c1ccc[n+](c1)[CH]2O[CH](CO[P]([O-])(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O
OpenEye OEToolkits 1.5.0
c1cc(c[n+](c1)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)([O-])O[P@@](=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O)O)O)C(=O)N
Formula
C21 H27 N7 O14 P2
Name
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
ChEMBL
CHEMBL1234613
DrugBank
DB14128
ZINC
PDB chain
1hzz Chain A Residue 400 [
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Receptor-Ligand Complex Structure
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PDB
1hzz
The crystal structure of an asymmetric complex of the two nucleotide binding components of proton-translocating transhydrogenase.
Resolution
2.5 Å
Binding residue
(original residue number in PDB)
R127 Q132 D135 G181 D202 V203 R204 G234 Q247 A265 L266
Binding residue
(residue number reindexed from 1)
R127 Q132 D135 G181 D202 V203 R204 G225 Q238 A256 L257
Annotation score
4
Binding affinity
MOAD
: Kd=30uM
Enzymatic activity
Catalytic site (original residue number in PDB)
R15 Q75 H99 G101 E123 R127 Q132 D135 S138 Y235 E296
Catalytic site (residue number reindexed from 1)
R15 Q75 H99 G101 E123 R127 Q132 D135 S138 Y226 E287
Enzyme Commision number
7.1.1.1
: proton-translocating NAD(P)(+) transhydrogenase.
Gene Ontology
Molecular Function
GO:0000166
nucleotide binding
GO:0003957
NAD(P)+ transhydrogenase (Si-specific) activity
GO:0005515
protein binding
GO:0008750
proton-translocating NAD(P)+ transhydrogenase activity
GO:0016491
oxidoreductase activity
GO:0046983
protein dimerization activity
GO:0050661
NADP binding
GO:0051287
NAD binding
GO:0070403
NAD+ binding
GO:0070404
NADH binding
Biological Process
GO:0006740
NADPH regeneration
GO:1902600
proton transmembrane transport
Cellular Component
GO:0005886
plasma membrane
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Molecular Function
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Biological Process
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Cellular Component
External links
PDB
RCSB:1hzz
,
PDBe:1hzz
,
PDBj:1hzz
PDBsum
1hzz
PubMed
11250201
UniProt
Q2RSB2
|PNTAA_RHORT NAD(P) transhydrogenase subunit alpha part 1 (Gene Name=pntAA)
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