Structure of PDB 1fxd Chain A Binding Site BS01

Receptor Information
>1fxd Chain A (length=58) Species: 879 (Megalodesulfovibrio gigas) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PIEVNDDCMACEACVEICPDVFEMNEEGDKAVVINPDSDLDCVEEAIDSC
PAEAIVRS
Ligand information
Ligand IDF3S
InChIInChI=1S/3Fe.4S
InChIKeyFCXHZBQOKRZXKS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.385S1[Fe]S[Fe]2S[Fe]1S2
OpenEye OEToolkits 2.0.7S1[Fe]2S[Fe]3[S]2[Fe]1S3
FormulaFe3 S4
NameFE3-S4 CLUSTER
ChEMBL
DrugBank
ZINC
PDB chain1fxd Chain A Residue 59 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB1fxd Refined crystal structure of ferredoxin II from Desulfovibrio gigas at 1.7 A.
Resolution1.7 Å
Binding residue
(original residue number in PDB)		C8 M9 A10 C11 E12 A13 C14 M24 A31 C50 I55
Binding residue
(residue number reindexed from 1)		C8 M9 A10 C11 E12 A13 C14 M24 A31 C50 I55
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005506 iron ion binding
GO:0009055 electron transfer activity
GO:0046872 metal ion binding
GO:0051538 3 iron, 4 sulfur cluster binding

View graph for
Molecular Function
External links
PDB RCSB:1fxd, PDBe:1fxd, PDBj:1fxd
PDBsum1fxd
PubMed2056535
UniProtP00209|FER_MEGGA Ferredoxin-2

[Back to BioLiP]