Structure of PDB 1f8v Chain A Binding Site BS01

Receptor Information
>1f8v Chain A (length=355) Species: 103782 (Pariacoto virus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NRRNKARKVVSRSTALVPMAPASQRTGPAPRKPRKRNQALVRNPRLTDAG
LAFLKCAFAAPDFSVDPGKGIPDNFHGRTLAIKDCNTTSVVFTPNTDTYI
VVAPVPGFAYFRAEVAVGAQPTTFVGVPYPTYATNFGAGSQNGLPAVNNY
SKFRYASMACGLYPTSNMMQFSGSVQVWRVDLNLSEAVNPAVTAITPAPG
VFANFVDKRINGLRGIRPLAPRDNYSGNFIDGAYTFAFDKSTDFEWCDFV
RSLEFSESNVLGAATAMKLLAPGGGTDTTLTGLGNVNTLVYKISTPTGAV
NTAILRTWNCIELQPYTDSALFQFSGVSPPFDPLALECYHNLKMRFPVAV
SSREN
Ligand information
>1f8v Chain R (length=25) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
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Receptor-Ligand Complex Structure
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PDB1f8v The structure of pariacoto virus reveals a dodecahedral cage of duplex RNA.
Resolution3.0 Å
Binding residue
(original residue number in PDB)		K11 R13
Binding residue
(residue number reindexed from 1)		K5 R7
Enzymatic activity
Enzyme Commision number 3.4.23.44: nodavirus endopeptidase.
Gene Ontology
Molecular Function
GO:0004190 aspartic-type endopeptidase activity
Biological Process
GO:0006508 proteolysis

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Molecular Function
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Biological Process
External links
PDB RCSB:1f8v, PDBe:1f8v, PDBj:1f8v
PDBsum1f8v
PubMed11135676
UniProtQ9J7Z0|CAPSD_PAV Capsid protein alpha (Gene Name=alpha)

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