Structure of PDB 1e7k Chain A Binding Site BS01
Receptor Information
>1e7k Chain A (length=125) Species:
9606
(Homo sapiens) [
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ADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEF
IVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACS
VTIKEGSQLKQQIQSIQQSIERLLV
Ligand information
>1e7k Chain C (length=17) [
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gccaaugaggccgaggc
<<<.....<<>>..>>>
Receptor-Ligand Complex Structure
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PDB
1e7k
Crystal Structure of the Spliceosomal 15.5Kd Protein Bound to a U4 Snrna Fragment
Resolution
2.9 Å
Binding residue
(original residue number in PDB)
K37 G38 N40 E41 K44 R48 E61 K86 S96 R97 V99 I100
Binding residue
(residue number reindexed from 1)
K34 G35 N37 E38 K41 R45 E58 K83 S93 R94 V96 I97
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0003723
RNA binding
GO:0005515
protein binding
GO:0030515
snoRNA binding
GO:0030621
U4 snRNA binding
GO:0030622
U4atac snRNA binding
GO:0034511
U3 snoRNA binding
GO:0034512
box C/D sno(s)RNA binding
GO:0051117
ATPase binding
Biological Process
GO:0000398
mRNA splicing, via spliceosome
GO:0000492
box C/D snoRNP assembly
GO:0006397
mRNA processing
GO:0007338
single fertilization
GO:0008380
RNA splicing
GO:0030490
maturation of SSU-rRNA
GO:0042254
ribosome biogenesis
GO:0042274
ribosomal small subunit biogenesis
Cellular Component
GO:0001651
dense fibrillar component
GO:0005634
nucleus
GO:0005654
nucleoplasm
GO:0005681
spliceosomal complex
GO:0005690
U4atac snRNP
GO:0005730
nucleolus
GO:0031428
box C/D methylation guide snoRNP complex
GO:0032040
small-subunit processome
GO:0032991
protein-containing complex
GO:0046540
U4/U6 x U5 tri-snRNP complex
GO:0071005
U2-type precatalytic spliceosome
GO:0071011
precatalytic spliceosome
GO:1990904
ribonucleoprotein complex
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Molecular Function
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Biological Process
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Cellular Component
External links
PDB
RCSB:1e7k
,
PDBe:1e7k
,
PDBj:1e7k
PDBsum
1e7k
PubMed
11163207
UniProt
P55769
|NH2L1_HUMAN NHP2-like protein 1 (Gene Name=SNU13)
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