Structure of PDB 1ddh Chain A Binding Site BS01

Receptor Information
>1ddh Chain A (length=274) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MSHSLRYFVTAVSRPGFGEPRYMEVGYVDNTEFVRFDSDAENPRYEPRAR
WIEQEGPEYWERETRRANGNEQSFRVDLRTALRYYNQSAGGSHTLQWMAG
CDVESDGRLLRGYWQFAYDGCDYIALNEDLKTWTAADMAAQITRRKWEQA
GAAERDRAYLEGECVEWLRRYLKNGNATLLATDPPKAHVTHHRRPEGDVT
LRCWALGFYPAEITLTWQLNGEELTQEMELVETRPAGDGTFQKWASVVVP
LGKQQKYTCHVEHEGLPEPLTLRW
Ligand information
>1ddh Chain P (length=10) Species: 11676 (Human immunodeficiency virus 1) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
RGPGRAFVTI
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB1ddh Three-dimensional structure of H-2Dd complexed with an immunodominant peptide from human immunodeficiency virus envelope glycoprotein 120.
Resolution3.1 Å
Binding residue
(original residue number in PDB)		Y7 R62 E63 R66 N70 S73 D77 Y84 W97 W114 F116 Y123 T143 K146 W147 R155 Y159 E163 W167 Y171
Binding residue
(residue number reindexed from 1)		Y7 R62 E63 R66 N70 S73 D77 Y84 W97 W114 F116 Y123 T143 K146 W147 R155 Y159 E163 W167 Y171
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:1ddh, PDBe:1ddh, PDBj:1ddh
PDBsum1ddh
PubMed9761682
UniProtP01900|HA12_MOUSE H-2 class I histocompatibility antigen, D-D alpha chain (Gene Name=H2-D1)

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