Structure of PDB 1d6k Chain A Binding Site BS01

Receptor Information

>1d6k Chain A (length=94) Species: 562 (Escherichia coli)

MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNM
QAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA

Ligand information

>1d6k Chain B (length=37)

ggaccgaugguagugucuucggaugcgagaguagguc

.<<<<...<...<<<<<<..>>>>>>.....>.>>>>

Receptor-Ligand Complex Structure

Structure summary

• PDB: 1d6k The NMR structure of the 5S rRNA E-domain-protein L25 complex shows preformed and induced recognition.
• Resolution: N/A
• Binding residue (original residue number in PDB): R9 Q12 G13 K14 G15 S17 R18 P27 I29 Y31 K34 P37 Q75 Q78 Q87 H88
• Binding residue (residue number reindexed from 1): R9 Q12 G13 K14 G15 S17 R18 P27 I29 Y31 K34 P37 Q75 Q78 Q87 H88

Gene Ontology

Molecular Function

• GO:0003723 RNA binding
• GO:0003735 structural constituent of ribosome
• GO:0008097 5S rRNA binding
• GO:0019843 rRNA binding

Biological Process

• GO:0000027 ribosomal large subunit assembly
• GO:0002181 cytoplasmic translation
• GO:0006412 translation
• GO:0009314 response to radiation
• GO:0017148 negative regulation of translation

Cellular Component

• GO:0005737 cytoplasm
• GO:0005829 cytosol
• GO:0005840 ribosome
• GO:0022625 cytosolic large ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:1d6k, PDBe:1d6k, PDBj:1d6k
• PDBsum: 1d6k
• PubMed: 10562563
• UniProt: P68919|RL25_ECOLI Large ribosomal subunit protein bL25 (Gene Name=rplY)