Structure of PDB 1d5a Chain A Binding Site BS01

Receptor Information
>1d5a Chain A (length=733) Species: 108142 (Desulfurococcus sp. Tok) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MILDADYITEDGKPVIRVFKKEKGEFKIDYDRDFEPYIYALLKDDSAIED
IKKITAERHGTTVRVTRAERVKKKFLGRPVEVWKLYFTHPQDVPAIRDKI
REHPAVVDIYEYDIPFAKRYLIDRGLIPMEGDEELRMLAFDIETLAHAGA
AAGAGPILMISYADEEGARVITWKNIDLPYVESVSTEKEMIKRFLKVIQE
KDPDVLITYNGDNFDFAYLKKRSEMLGVKFILGRDGSEPKIQRMGDRFAV
EVKGRIHFDLYPVIRRTINLPTYTLETVYEPVFGQPAEKVYAEEIAEAWA
SGEGLERVARYSMEDAKATYELGKEFFPMEAQLSRLVGQSLWDVSRSSTG
NLVEWFLLRKAYERNDVAPNKPDERELARRTESYAGGYVKEPEKGLWENI
VYLDYKSLYPSIIITHNVSPDTLNREGCREYDVAPQVGHRFCKDFPGFIP
SLLGDLLEERQKVKKKMKATVDPIERKLLDYRQRAIKILANSYYGYYAYA
NARWYCRECAESVTAWGRQYIETTMREIEEKFGFKVLYADTDGFFATIPG
ADAETVKNKAKEFLNYINPRLPGLLELEYEGFYRRGFFVTKKKYAVIDEE
DKITTRGLEIVRRDWSEIAKETQARVLEAILKHGDVEEAVRIVKEVTEKL
SRHEVPPEKLVIYEAGPHVAAAATVISYIVLKGPGRVGDRAIPFDEFDPA
KHRYDAEYYIENQVLPAVERILRAFGYRKEDLR
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain1d5a Chain A Residue 5030 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB1d5a Crystal structure of an archaebacterial DNA polymerase.
Resolution2.4 Å
Binding residue
(original residue number in PDB)		D141 D315
Binding residue
(residue number reindexed from 1)		D141 D315
Annotation score1
Enzymatic activity
Enzyme Commision number 2.7.7.7: DNA-directed DNA polymerase.
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0003676 nucleic acid binding
GO:0003677 DNA binding
GO:0003887 DNA-directed DNA polymerase activity
GO:0004527 exonuclease activity
GO:0046872 metal ion binding
Biological Process
GO:0006260 DNA replication
GO:0006261 DNA-templated DNA replication
GO:0071897 DNA biosynthetic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:1d5a, PDBe:1d5a, PDBj:1d5a
PDBsum1d5a
PubMed10545321
UniProtQ7SIG7|DPOL_DESST DNA polymerase (Gene Name=pol)

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