Structure of PDB 1c10 Chain A Binding Site BS01

Receptor Information

>1c10 Chain A (length=129) Species: 9031 (Gallus gallus)

KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGS
TDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVS
DGNGMNAWVAWRNRCKGTDVQAWIRGCRL

Ligand information

• Ligand ID: XE
• InChI: InChI=1S/Xe
• InChIKey: FHNFHKCVQCLJFQ-UHFFFAOYSA-N
• SMILES:
  ACDLabs 10.04
  CACTVS 3.341
  OpenEye OEToolkits 1.5.0: [Xe]
• Formula: Xe
• Name: XENON
• ChEMBL: CHEMBL1236802
• DrugBank: DB13453
• PDB chain: 1c10 Chain A Residue 152

Receptor-Ligand Complex Structure

Structure summary

• PDB: 1c10 Exploring hydrophobic sites in proteins with xenon or krypton.
• Resolution: 2.03 Å
• Binding residue (original residue number in PDB): L56 I88 S91 V92
• Binding residue (residue number reindexed from 1): L56 I88 S91 V92
• Annotation score: 1

Enzymatic activity

• Catalytic site (original residue number in PDB): E35 N46 D48 S50 D52 N59
• Catalytic site (residue number reindexed from 1): E35 N46 D48 S50 D52 N59
• Enzyme Commision number: 3.2.1.17: lysozyme.

Gene Ontology

Molecular Function

• GO:0003796 lysozyme activity
• GO:0005515 protein binding
• GO:0016231 beta-N-acetylglucosaminidase activity
• GO:0016798 hydrolase activity, acting on glycosyl bonds
• GO:0042802 identical protein binding

Biological Process

• GO:0016998 cell wall macromolecule catabolic process
• GO:0031640 killing of cells of another organism
• GO:0042742 defense response to bacterium
• GO:0050829 defense response to Gram-negative bacterium
• GO:0050830 defense response to Gram-positive bacterium

Cellular Component

• GO:0005576 extracellular region
• GO:0005615 extracellular space
• GO:0005737 cytoplasm
• GO:0005783 endoplasmic reticulum

External links

• PDB: RCSB:1c10, PDBe:1c10, PDBj:1c10
• PDBsum: 1c10
• PubMed: 9443341
• UniProt: P00698|LYSC_CHICK Lysozyme C (Gene Name=LYZ)