Structure of PDB 1bim Chain A Binding Site BS01

Receptor Information
>1bim Chain A (length=334) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GNTTSSVILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSR
LYTACVYHKLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGIT
VTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVL
KEDVFSFYYNRDSESLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMK
GVSVGSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALGAKKRLFDYV
VKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIP
PPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR
Ligand information
Ligand ID0QB
InChIInChI=1S/C36H54N6O5S/c1-23(25-15-11-8-12-16-25)42(21-31(44)40(4)5)30(43)19-26(18-27-22-48-35(37)38-27)33(46)39-29(17-24-13-9-7-10-14-24)32(45)28-20-36(2,3)41(6)34(28)47/h8,11-12,15-16,22-24,26,28-29,32,45H,7,9-10,13-14,17-21H2,1-6H3,(H2,37,38)(H,39,46)/t23-,26+,28-,29-,32-/m0/s1
InChIKeyIFJSAOFSWZWPQF-SQMKVVGDSA-N
SMILES
SoftwareSMILES
CACTVS 3.352C[CH](N(CC(=O)N(C)C)C(=O)C[CH](Cc1csc(N)n1)C(=O)N[CH](CC2CCCCC2)[CH](O)[CH]3CC(C)(C)N(C)C3=O)c4ccccc4
ACDLabs 10.04O=C1N(C)C(C)(C)CC1C(O)C(NC(=O)C(Cc2nc(sc2)N)CC(=O)N(CC(=O)N(C)C)C(c3ccccc3)C)CC4CCCCC4
CACTVS 3.352C[C@H](N(CC(=O)N(C)C)C(=O)C[C@@H](Cc1csc(N)n1)C(=O)N[C@@H](CC2CCCCC2)[C@@H](O)[C@@H]3CC(C)(C)N(C)C3=O)c4ccccc4
FormulaC36 H54 N6 O5 S
Name(2S)-2-[(2-amino-1,3-thiazol-4-yl)methyl]-N~1~-{(1S,2S)-1-(cyclohexylmethyl)-2-hydroxy-2-[(3R)-1,5,5-trimethyl-2-oxopyrrolidin-3-yl]ethyl}-N~4~-[2-(dimethylamino)-2-oxoethyl]-N~4~-[(1S)-1-phenylethyl]butanediamide;
P2-P3 butanediamide renin inhibitor (3)
ChEMBL
DrugBank
ZINC
PDB chain1bim Chain A Residue 391 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB1bim Crystallographic studies on the binding modes of P2-P3 butanediamide renin inhibitors.
Resolution2.8 Å
Binding residue
(original residue number in PDB)
D32 G34 Y75 S76 T77 P111 F117 D215 G217 A218 S219 Y220 S222 M289 I291 A300
Binding residue
(residue number reindexed from 1)
D35 G37 Y80 S81 T82 P115 F121 D220 G222 A223 S224 Y225 S227 M297 I299 A308
Annotation score1
Binding affinityPDBbind-CN: -logKd/Ki=8.92,IC50=1.2nM
Enzymatic activity
Catalytic site (original residue number in PDB) D32 S35 N37 W39 Y75 D215 A218
Catalytic site (residue number reindexed from 1) D35 S38 N40 W42 Y80 D220 A223
Enzyme Commision number 3.4.23.15: renin.
Gene Ontology
Molecular Function
GO:0004190 aspartic-type endopeptidase activity
Biological Process
GO:0006508 proteolysis

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Molecular Function

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Biological Process
External links
PDB RCSB:1bim, PDBe:1bim, PDBj:1bim
PDBsum1bim
PubMed7493993
UniProtP00797|RENI_HUMAN Renin (Gene Name=REN)

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