Structure of PDB 6i0d Chain 9 Binding Site BS01

Receptor Information

>6i0d Chain 9 (length=180) Species: 300852 (Thermus thermophilus HB8)

TLKALAQSLGITLKYLFSKPVTVPYPDAPVALKPRFHGRHVLTRHPNGLE
KCIGCSLCAAACPAYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIFC
GLCEEACPTGAIVLGYDFEMADYEYSDLVYGKEDMLVDVVGTKPQRREAK
RTGKPVKVGYVVPYVRPELEGFKAPTEGGK

Ligand information

• Ligand ID: SF4
• InChI: InChI=1S/4Fe.4S
• InChIKey: LJBDFODJNLIPKO-UHFFFAOYSA-N
• SMILES:
  OpenEye OEToolkits 2.0.7: [S]12[Fe]3[S]4[Fe]1[S]5[Fe]2[S]3[Fe]45
  CACTVS 3.385: S1[Fe]S[Fe]1.S2[Fe]S[Fe]2
• Formula: Fe4 S4
• Name: IRON/SULFUR CLUSTER
• PDB chain: 6i0d Chain 9 Residue 201

Receptor-Ligand Complex Structure

Structure summary

• PDB: 6i0d Key role of quinone in the mechanism of respiratory complex I.
• Resolution: 3.6 Å
• Binding residue (original residue number in PDB): H41 C63 P64 I68 C98 I99 F100 C101 C104
• Binding residue (residue number reindexed from 1): H40 C62 P63 I67 C97 I98 F99 C100 C103
• Annotation score: 1

Enzymatic activity

• Enzyme Commision number: 7.1.1.-

Gene Ontology

Molecular Function

• GO:0003954 NADH dehydrogenase activity
• GO:0005506 iron ion binding
• GO:0016651 oxidoreductase activity, acting on NAD(P)H
• GO:0046872 metal ion binding
• GO:0048038 quinone binding
• GO:0050136 NADH:ubiquinone reductase (non-electrogenic) activity
• GO:0051539 4 iron, 4 sulfur cluster binding

Biological Process

• GO:0009060 aerobic respiration

Cellular Component

• GO:0005886 plasma membrane
• GO:0016020 membrane

External links

• PDB: RCSB:6i0d, PDBe:6i0d, PDBj:6i0d
• PDBsum: 6i0d
• PubMed: 32811817
• UniProt: Q56224|NQO9_THET8 NADH-quinone oxidoreductase subunit 9 (Gene Name=nqo9)