Structure of PDB 5tzs Chain 9 Binding Site BS01

Receptor Information
>5tzs Chain 9 (length=185) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PRAPRTYSKTYSTPKRPYESSRLDAELKLAGEFGLKNKKEIYRISFQLSK
IRRAARDLLTRDEKDPKRLFEGNALIRRLVRVGVLSEDKKKLDYVLALKV
EDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLD
SEKHIDFAPTSPFGGARPGRVARRNAARKAEASGE
Ligand information
>5tzs Chain 1 (length=515) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
caugcaugucuaaguauaagcaauuuauacagugaaacugcgaauggcuc
auuaaaucaguuaucguuuauuugauaguuccaugguauaacugugguaa
uucuagagcuaauacaugcuuguauuuauuaggaugauucauaauaacuu
uucgaaucgcauggccuugugcuggcgaugguucauucaaauuucugccc
uaucaacuuucgaugguaggauaguggccuaccaugguuucaacggguaa
cggggauuccggagagggagccugagaaacggcuaccacauccaaggaag
gcagcaggcgcguuacccaauccuaauucagggagguagugaaacgauac
agggccggucuuaauuggaaugaguacaauguaaauaccuuaacgagaag
ggcaccaccaggaguggagccugcggcgcgcgcuacacugacggagccag
cggaaacuccgucgugacgaggaauuccuaguaagcgcaagugcguugau
uacgucccugcccuu
..<<<..<<....<<....<<..........>>...>>.>>......<<.
.......<<<..<<..<<....<<<..........<.....<<.<<....
...>>.>>......>......<...<<<<<<.<......>.>>>>>>...
..>...<<<<..<<<.....>>>.>>>>....>>>...>>>>..>>>.<<
<....<<<....<<<<<<<<.......>>>>>>>>>>>......>>>...
<<<.....>>>.>>.<<.<<<..........>>>.>>.<.<<....>>.>
...>>>........<<<....<<<.....>>>..>>>.......<<<<<.
.<<<<<>>>>>>>.>>>......<<..<...........>..>>...<<<
<<<<..<<..<<<<<..<<<.<<<...>>>.>>>.....<<<<<<<....
......>>>>>>>..........>>>>>.....<<<<<<..>>>>>>...
...>>...>>>>>>>
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5tzs Architecture of the yeast small subunit processome.
Resolution5.1 Å
Binding residue
(original residue number in PDB)		P169 G170 R171 V172 A173
Binding residue
(residue number reindexed from 1)		P168 G169 R170 V171 A172
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0005515 protein binding
GO:0019843 rRNA binding
Biological Process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006364 rRNA processing
GO:0006412 translation
GO:0042254 ribosome biogenesis
GO:0042274 ribosomal small subunit biogenesis
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:0022627 cytosolic small ribosomal subunit
GO:0030686 90S preribosome
GO:0032040 small-subunit processome
GO:0043226 organelle
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
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Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5tzs, PDBe:5tzs, PDBj:5tzs
PDBsum5tzs
PubMed27980088
UniProtO13516|RS9A_YEAST Small ribosomal subunit protein uS4A (Gene Name=RPS9A)

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