Structure of PDB 7nad Chain 8 Binding Site BS01

Receptor Information
>7nad Chain 8 (length=58) Species: 1247190 (Saccharomyces cerevisiae BY4741) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KVSKSTKKFQSKHLKHTLDQRRKEKIQKKRIQGRRGNKTDQEKADAAGTR
EQQQLKKS
Ligand information
>7nad Chain 1 (length=697) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
augccugaauagggugaagccagaggaaacucugguggaggcucgcgaau
uuggguauaguagcaaauauucaaaugagaacuuugaagacugaaguggg
gaaagguuccacgucaacagcaguuggacguggguuagucgauccuaaga
gaugguuucaaaggccugacaggccaccaucgaaagggaauccgguuaag
auuccggaaccuggauauggauucuucacgguaacguaacugaaugugga
gacgucggcgcgagcccugggaggaguuaucuuuucuucuuaacagcuua
ucaccccggaauugguuuauccggagauggggucuuauggcuggaagagg
ccagcaccuuugcuggcuccggugcgcuugugacggcccgugaaaaucca
caggaaggaauaguuuucaugccaggucguacugucuccaaggugaacag
ccucuaguugauagaagauaagggaagucgguccguaacuucgggauaag
gauuggcucuaagggucggguagugagggccuuggucacggccuuggcuu
gcuacaauuaacgaucaacuuagaacugguacggacaaggggaaucugac
uguuaacgagauucccacugucccuaucuacuaucuagcgaggcugucug
aucaggcauugcguaagcaguagaguagccguuacgaucugcugaga
<<<<<<<<...<<<....<<<<<<<....>>>>>>>.....>>>......
>>>>>>>>....<<.....<<<<<<.......>>>>>><<<<.....<<<
<<.<<...<<<<<<...<<.....>>.>>>>>>....((<<<<<<...<<
............<<<<<<.>>>>>>....>>....>>...<<<<<.....
...>>>>>))<<<<.<<<<<<......<<<....>>>.......<<<<<<
...<<<<.<<<<<<<.<<<<<<<<<<..(((..>>>>>><...<<<<<..
..<<<<<<....<<<.....>>>....>>>>>>.....>>>>>....><<
<<<<<......>>>>>>>>>>>...>>>>>>>.>>>>.........>>>>
>>............>>.>>>>>>>>>>>>..>>.>>>>>.<<<<.....>
>>>..>>>>..<<<<.<<<<.<<........<<<<<<.<<<<........
.............<<<<<.<<<<<<<<..<<..<<<<..>>>>..>>>>>
>>>>>......>>>>>......>>>...>>>>>>>....<<<<<<<<<..
......>>.>>>>>>>.....>>.>>>>.....>>>>>>...<<<<<<<)
)).>>>>>..>>....<<<<....<<.......>>...>>>>.....
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7nad Sequence-specific remodeling of a topologically complex RNP substrate by Spb4.
Resolution3.04 Å
Binding residue
(original residue number in PDB)		K3 S5 K6 S7 T8 K9 K10 F11 Q12 L20 Q22 R23 Q29 R36 G38 N39
Binding residue
(residue number reindexed from 1)		K1 S3 K4 S5 T6 K7 K8 F9 Q10 L18 Q20 R21 Q27 R34 G36 N37
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003729 mRNA binding
GO:0005515 protein binding
Biological Process
GO:0042254 ribosome biogenesis
GO:0042273 ribosomal large subunit biogenesis
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005730 nucleolus
GO:0005739 mitochondrion
GO:0030687 preribosome, large subunit precursor
GO:0030690 Noc1p-Noc2p complex
GO:0030691 Noc2p-Noc3p complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7nad, PDBe:7nad, PDBj:7nad
PDBsum7nad
PubMed36482249
UniProtP39744|NOC2_YEAST Nucleolar complex protein 2 (Gene Name=NOC2)

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