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Receptor Information

>8p62 Chain 7 (length=663) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

ALPSIQLPVDYNNLFNEITDFLVTFKQKGPKYMAMLQKVANRELNSVIID
LDDILQYQNEKFLQGTQADDLVSAIQQNANHFTELFCRAIDNNMPLPTKE
IDYKDDVLDVILNQRRLRNERMLTELFPPNLTRRYFLYFKPLSQNCARRY
RKKAISSKPLSVRQIKGDFLGQLITVRGIITRVSDVKPAVEVIAYTCDQC
GYEVFQEVNSRTFTPLSECTSEECSQNQTKGQLFMSTRASKFSAFQECKI
QELSQQVPVGHIPRSLNIHVNGTLVRSLSPGDIVDVTGIFLPAPYTGFKA
LKAGLLTETYLEAQFVRQHKKKFASFSLTSDVEERVMELITSGDVYNRLA
KSIAPEIYGNLDVKKALLLLLVGGVDKRVGDGMKIRGDINVCLMGDPGVA
KSQLLKAICKISPRGVYTTGKGSSGVGLTAAVMKDPVTDEMILEGGALVL
ADNGICCIDEFDKMDESDRTAIHEVMEQQTISISKAGINTTLNARTSILA
AANPLYGRYNPRLSPLDNINLPAALLSRFDILFLMLDIPSRDDDEKLAEH
VTYVHMHNKQPDLDFTPVEPSKMREYIAYAKTKRPVMSEAVNDYVVQAYI
RLRQDSKREMDSKFSFGQATPRTLLGIIRLSQALAKLRLADMVDIDDVEE
ALRLVRVSKESLY

Ligand ID

ATP

InChI

InChI=1S/C10H16N5O13P3/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(26-10)1-25-30(21,22)28-31(23,24)27-29(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H,23,24)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1

InChIKey

ZKHQWZAMYRWXGA-KQYNXXCUSA-N

SMILES

Software	SMILES
OpenEye OEToolkits 1.5.0	c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341	Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
ACDLabs 10.04	O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
OpenEye OEToolkits 1.5.0	c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@](=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341	Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@](O)(=O)O[P@@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O

Formula

C10 H16 N5 O13 P3

Name

ADENOSINE-5'-TRIPHOSPHATE

PDB chain

8p62 Chain 7 Residue 901 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	8p62 Unwinding of a eukaryotic origin of replication visualized by cryo-EM.
Resolution	3.9 Å
Binding residue (original residue number in PDB)	Y423 P462 G463 V464 A465 K466 S467 L612
Binding residue (residue number reindexed from 1)	Y358 P397 G398 V399 A400 K401 S402 L547
Annotation score	5

Enzyme Commision number

3.6.4.12: DNA helicase.

	Molecular Function
GO:0003677	DNA binding
GO:0003678	DNA helicase activity
GO:0003682	chromatin binding
GO:0003688	DNA replication origin binding
GO:0003697	single-stranded DNA binding
GO:0004386	helicase activity
GO:0005515	protein binding
GO:0005524	ATP binding
GO:0008270	zinc ion binding
GO:0009378	four-way junction helicase activity
GO:0016787	hydrolase activity
GO:0016887	ATP hydrolysis activity
GO:0017116	single-stranded DNA helicase activity
GO:0043138	3'-5' DNA helicase activity
GO:1904931	MCM complex binding

	Biological Process
GO:0000727	double-strand break repair via break-induced replication
GO:0006260	DNA replication
GO:0006267	pre-replicative complex assembly involved in nuclear cell cycle DNA replication
GO:0006268	DNA unwinding involved in DNA replication
GO:0006270	DNA replication initiation
GO:0006271	DNA strand elongation involved in DNA replication
GO:0006279	premeiotic DNA replication
GO:0030466	silent mating-type cassette heterochromatin formation
GO:0031509	subtelomeric heterochromatin formation
GO:0033260	nuclear DNA replication

	Cellular Component
GO:0000781	chromosome, telomeric region
GO:0005634	nucleus
GO:0005654	nucleoplasm
GO:0005656	nuclear pre-replicative complex
GO:0005737	cytoplasm
GO:0031261	DNA replication preinitiation complex
GO:0031298	replication fork protection complex
GO:0042555	MCM complex
GO:0043596	nuclear replication fork
GO:0071162	CMG complex
GO:0097373	MCM core complex

PDB	RCSB:8p62, PDBe:8p62, PDBj:8p62
PDBsum	8p62
PubMed	38760633
UniProt	P38132\|MCM7_YEAST DNA replication licensing factor MCM7 (Gene Name=MCM7)

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Structure of PDB 8p62 Chain 7 Binding Site BS01