Structure of PDB 6ywy Chain 66 Binding Site BS01

Receptor Information
>6ywy Chain 66 (length=283) Species: 5141 (Neurospora crassa) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VQSVRRQKMFSWLDKKGSAYKEHTRQGPNLLGGQGKDGLAVPFPNNPYFK
SQPVLSEGSREIIYQDVMEKGLPIKAVSAKYNVDVRRVAAVIRLKEIEKR
WIKEYKPLARPYARAVMKMLPQTVLGGPDQKPHESINDVHVHSYTTQQLF
VPVSESREFTREDAAKAFGDHILPVDKKLRVPELIEFQKDLLKEVPLQEA
NRKFLNATAASEAKIAEREAKRRQAVEDAITRVKTDRFEFRFQEFNAENV
GHDGRDRNAVGWRYGVPFPDRKRSQIKIPTKVE
Ligand information
>6ywy Chain aa (length=1435) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
auagaugaguuuggugauggcucugauugaacacuguccaaauacuugac
acaugcuaaucgaacguuuaauuuuggcucuuaauuaaaagugguguaca
ggugaguauaauauuuuuucgcuuaacuuaaagugaaggcaaauccuuca
uauugcaaaaggauaucuauauccgcuuuaagaggaugagaaaaguuuca
gagauagguaguuguuaaggucauggcuuaacaagccaauaauucucuua
gucgaagcugaaaaggcugaucgaccacauugggaaugaaaaaaucccaa
ggcaaauagguacagcagugaggaaucuuggucaaugggcccacgccuga
acugguaacuuggaggaaugagacgucgauuuaucgaguaaaauucugua
uacauauugauaaugacaauauguacauuugucuugacuaauuacgugcc
agcagucgcggcaauacguaagagacuaguguuaaucaucauaaauaggu
uuaaaggguacucagacggaaaaauucgcccaaauauaggggacaauuuu
ucuagaguuuuauguaagaaggucguacucuagaguggagagauaaaauu
cugugauaccuaggggacggguaaaggcgaaggcaaucuuuuauguaaaa
acugacgucgaaggacgaaggcaaagggaacaaaaaggauuagauacccc
aguagucuuugcagacaauuaugaaugccauagguuagauuuuuaauuua
gucuauaaaugaaaguguaagcauuucaccucaagaguaaggcggcaacg
caggaacugaaaucacuagaccguuucugacaccagcaaugaaguauguu
auuuaauucggugacccacgaaaaaccuuaccacaauuugaauauuaauu
auuaauacaaguguugcacggcugucuucaguugauguugcgaaacugug
guucguuccauggaauuaacguaaacccuugcuuuauuuguaaauauuau
aaagcaguucaccuuuauauaggaaaugauaaaagggaucaagacaaguc
aucauggccuaaauauugugggcuauagacgugccacauuuuccuaaaca
aagagaugcaaaaaugugaauuuuagcuaaucucaaaaaauaggauaaaa
auauacaaggauuguagucugaaauucgacugcaugaauaagaaauugcu
aguaaucgugaaucaccaugacacggugaauauucccucggauugguacu
aaccacucgucacaugcugaaaggagugcgugcaauaaguuugcuuuucu
guuauaaguaaguagacauauagguuuagauguuauaauaggauccuucg
uaugcgcggcucugauuaguguuaagucgaaauacgguucguguagugga
aguugcacgggacuuaucaauguugaacaauacga
......((((..<<<<<<.))))<<<<<.<<<<<..<<<<<.<<.....<
<<.<<<..<<<..<<.<<<<<<<..<<.>>..>>>>>>>.>>>>>.....
.<<.........<<<<<<<..<<...<<<<<<<<<<<<<.....>>>>>.
..........<<<<<<..>>>>>>>>>>>>>>.>>....>>>>>>>...<
<<<<..<<<..<<<<<<<<.......>>>>>>>>>>>......>>>>>..
<<<<.<<<<.....>>>>...>>>>.>>.<<<<<...........>>>>>
.<<......>>...>>>>>>.........<<<....<<<<....>>>>..
>>>..>>..>>>>>.<<<<......<<<<<..>>>>>.....>>>>....
<<<<<<<<<.......>>>>>>>>>.....<<<<<(((...<<<<<....
.<<.)))>>.......>>>>>>>>>>..>>>>>>>>>>.........<<<
((.....<<..<..<<<.<<<<<<<<.<<<<.......>>>..>>>>>>>
>>...<<<<<......<<<<<<<.<..<<<<<<.<<<..<<<......>>
>.....>>>>>>>>>..>........<<....>>.>>>>>>>......>>
>>>...>>>...>.>>....<<<<<<...<<.....<<.........>>.
....>>>>>>>>..........<<<<<<.<<<<<<<<<<<<...>>>>>>
>>>>>>..<<..))>>....>>>>>>.>>>.<<........<<<....>>
>......>>..>>>>>><<<<<...<<<<<....<<<<<<...<<<<<<<
<<......<<........>>..........<<<<<<<.....<<<<<<<.
>>>>>>>..<<.<<...<.<<<<<<<....<<<<<<<<<....>>>.<<<
<......>>>>...>>>>>>.....<<<<<<<<<<<<...........>>
>>>>>>..<<.<<<......>>>....>>....>>>>.....>>>.>>>.
..>.>.>>>>....>>>>>>>...>>.>>>>>>>.......<<<<<....
..<<<..<...<<<<....>>>>...>....>>>......>>>>>.....
.......<....<<<<<<<........>>>>>>>....>.....>>>>>>
....<<<<<<...........>>>>>>..........>>>>>..>>>.>>
....<.<<<.<..<<<<<<<..<<<<<.<<<<<<....<.......<<<<
<<<<<<<.....<<<<<......>>>>>....>>>>>>>>>>>.....>.
..>>>>>>>>>>>..>>>>>>>...>.>>>..>.....<<<<<<<<<...
.>>>>>>>>>.........................
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6ywy Analysis of translating mitoribosome reveals functional characteristics of translation in mitochondria of fungi.
Resolution3.05 Å
Binding residue
(original residue number in PDB)		Q67 V69 R70 R71 F75 S208 Y209 Q212 R302 F303 R320 G330 V331 P332 F333 D335 R336 K337 R338 S339 Q340
Binding residue
(residue number reindexed from 1)		Q2 V4 R5 R6 F10 S143 Y144 Q147 R237 F238 R255 G265 V266 P267 F268 D270 R271 K272 R273 S274 Q275
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0032543 mitochondrial translation
Cellular Component
GO:0005739 mitochondrion
GO:0005763 mitochondrial small ribosomal subunit

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6ywy, PDBe:6ywy, PDBj:6ywy
PDBsum6ywy
PubMed33056988
UniProtQ7SHB2|RT35_NEUCR Small ribosomal subunit protein mS45 (Gene Name=mrps35)

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