Structure of PDB 8xjv Chain 6 Binding Site BS01

Receptor Information
>8xjv Chain 6 (length=85) Species: 8355 (Xenopus laevis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLE
NVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY
Ligand information
>8xjv Chain Au (length=2116) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
gagcatccggatcccctggagaatcccggtgccgaggccgctcaattggt
cgtagacagctctagcaccgcttaaacgcacgtacgcgctgtcccccgcg
ttttaaccgccaaggggattactccctagtctccaggcacgtgtcacata
tatacatcctgttccagtgggacccgagcatccggatcccctggagaatc
ccggtgccgaggccgctcaattggtcgtagacagctctagcaccgcttaa
acgcacgtacgcgctgtcccccgcgttttaaccgccaaggggattactcc
ctagtctccaggcacgtgtcacatatatacatcctgttccagtgccggac
ccgagcatccggatcccctggagaatcccggtgccgaggccgctcaattg
gtcgtagacagctctagcaccgcttaaacgcacgtacgcgctgtcccccg
cgttttaaccgccaaggggattactccctagtctccaggcacgtgtcaca
tatatacatcctgttccagtgccggacccgagcatccggatcccctggag
aatcccggtgccgaggccgctcaattggtcgtagacagctctagcaccgc
ttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaaggggatta
ctccctagtctccaggcacgtgtcacatatatacatcctgttccagtgcc
ggacccgagcatccggatcccctggagaatcccggtgccgaggccgctca
attggtcgtagacagctctagcaccgcttaaacgcacgtacgcgctgtcc
cccgcgttttaaccgccaaggggattactccctagtctccaggcacgtgt
cacatatatacatcctgttccagtgccggacccgagcatccggatcccct
ggagaatcccggtgccgaggccgctcaattggtcgtagacagctctagca
ccgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaagggg
attactccctagtctccaggcacgtgtcacatatatacatcctgttccag
tgccggacccgagcatccggatcccctggagaatcccggtgccgaggccg
ctcaattggtcgtagacagctctagcaccgcttaaacgcacgtacgcgct
gtcccccgcgttttaaccgccaaggggattactccctagtctccaggcac
gtgtcacatatatacatcctgttccagtgccggacccgagcatccggatc
ccctggagaatcccggtgccgaggccgctcaattggtcgtagacagctct
agcaccgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaa
ggggattactccctagtctccaggcacgtgtcacatatatacatcctgtt
ccagtgccggacccgagcatccggatcccctggagaatcccggtgccgag
gccgctcaattggtcgtagacagctctagcaccgcttaaacgcacgtacg
cgctgtcccccgcgttttaaccgccaaggggattactccctagtctccag
gcacgtgtcacatatatacatcctgttccagtgccggacccgagcatccg
gatcccctggagaatcccggtgccgaggccgctcaattggtcgtagacag
ctctagcaccgcttaaacgcacgtacgcgctgtcccccgcgttttaaccg
ccaaggggattactccctagtctccaggcacgtgtcacatatatacatcc
tgttccagtgccggacccgagcatccggatcccctggagaatcccggtgc
cgaggccgctcaattggtcgtagacagctctagcaccgcttaaacgcacg
tacgcgctgtcccccgcgttttaaccgccaaggggattactccctagtct
ccaggcacgtgtcacatatatacatcctgttccagtgccggacccgagca
tccggatcccctggagaatcccggtgccgaggccgctcaattggtcgtag
acagctctagcaccgcttaaacgcacgtacgcgctgtcccccgcgtttta
accgccaaggggattactccctagtctccaggcacgtgtcacatatatac
atcctgttccagtgcc
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8xjv Structural basis for linker histone H5-nucleosome binding and chromatin fiber compaction.
Resolution3.6 Å
Binding residue
(original residue number in PDB)		K3258 H3260 R3261 K3262 R3265 R3277 R3287 I3288 S3289 G3290 Y3293 K3321
Binding residue
(residue number reindexed from 1)		K3 H5 R6 K7 R10 R22 R32 I33 S34 G35 Y38 K66
External links
PDB RCSB:8xjv, PDBe:8xjv, PDBj:8xjv
PDBsum8xjv
PubMed39103524
UniProtP62799|H4_XENLA Histone H4

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