Structure of PDB 6lqq Chain 5J Binding Site BS01

Receptor Information
>6lqq Chain 5J (length=151) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SKFQEIETNLKKLPKLETGFDALANKKKKKNVLPSNDWFTLPKPDDNMRR
EVQRDLLLIKHRAALDPKRHYKKQRWEVPERFAIGTIIEDKSEFYSSRMN
RKERKSTILETLMGDEASNKYFKRKYNEIQEKSTSGRKAHYKKMKEMRKK
R
Ligand information
>6lqq Chain 5A (length=375) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ugcgaaagcaguugaagacaaguggcuugucguucguuaaaauggccucg
ucaaacggugguacagcguguuuaauugacauggguugauaaccugaaca
gucucaucguggccauuggugagcagcgaaggauuugguggauuacuagc
uaauagcaaucuauuucaaagaauucaaacuugggggaaugccuuguuga
auagccggucgcaagacugugauucuucaaguguaaccuccucucuauca
aacguaccgguaucuguuuggugggaaacucaaagagugcuaugguaugg
ugacggagugcgcuggucaagaguguaaaagcuuuuugaacagagagcau
uuccggcagcagagauuucagcugu
<<<....>>>...<<<<<<<<<<.>>>>>>>.>>>..............<
<<<<<<<.<<...>>.>>>......>>>>>..<<<<<<.>>>>>>.....
..<<<<<<<<<..>>>.>>>>>>.........................<<
<...>>>.........................<<<<<..<<<<<<<..<<
<<...<<<<<....>>>>>.>.>>>..>>>>.>>.>>>>>>....<<<<<
<<<<<<<..>>>.>.>>>>>>>>...........................
...<<<<.<<<.<<<.<<<<<<<<......>>>>.>>>>.>>>...>>>.
.>>>><<<<<.<<<..>>>.>>>>>
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6lqq Cryo-EM structure of 90 S small ribosomal subunit precursors in transition states.
Resolution4.1 Å
Binding residue
(original residue number in PDB)
K60 Q195 R202 K203 K207
Binding residue
(residue number reindexed from 1)
K11 Q130 R137 K138 K142
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003674 molecular_function
Biological Process
GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000472 endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000480 endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006364 rRNA processing
GO:0006396 RNA processing
GO:0042254 ribosome biogenesis
Cellular Component
GO:0005634 nucleus
GO:0005730 nucleolus

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:6lqq, PDBe:6lqq, PDBj:6lqq
PDBsum6lqq
PubMed32943522
UniProtQ12035|FCF2_YEAST rRNA-processing protein FCF2 (Gene Name=FCF2)

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