Structure of PDB 6ywx Chain 44 Binding Site BS01

Receptor Information
>6ywx Chain 44 (length=260) Species: 367110 (Neurospora crassa OR74A) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QHYLMPLRDNFEQEGIRNFLSPGSVNMAYTEYQTFILEKLNALVVGTDFE
QKDTKSIVLATARDPELAHVFNHASMAHNNHFFFDHLSPVPVKMGDKLFY
HINENFGSVDTLRDEMIGTAVSMFGPGFVWLVRTQLPGQPVALRVMATYL
AGSPYPGAHWRRQEMDAQTSIGSSPQGLSNGQRFFERSAAGFKGNKLEPT
APGGTDLIPILCLNTWEYAWLREYGTGVGGMGGKLAYAQSWWNMIDWAKV
EEEARLETRI
Ligand information
>6ywx Chain aa (length=1435) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
auagaugaguuuggugauggcucugauugaacacuguccaaauacuugac
acaugcuaaucgaacguuuaauuuuggcucuuaauuaaaagugguguaca
ggugaguauaauauuuuuucgcuuaacuuaaagugaaggcaaauccuuca
uauugcaaaaggauaucuauauccgcuuuaagaggaugagaaaaguuuca
gagauagguaguuguuaaggucauggcuuaacaagccaauaauucucuua
gucgaagcugaaaaggcugaucgaccacauugggaaugaaaaaaucccaa
ggcaaauagguacagcagugaggaaucuuggucaaugggcccacgccuga
acugguaacuuggaggaaugagacgucgauuuaucgaguaaaauucugua
uacauauugauaaugacaauauguacauuugucuugacuaauuacgugcc
agcagucgcggcaauacguaagagacuaguguuaaucaucauaaauaggu
uuaaaggguacucagacggaaaaauucgcccaaauauaggggacaauuuu
ucuagaguuuuauguaagaaggucguacucuagaguggagagauaaaauu
cugugauaccuaggggacggguaaaggcgaaggcaaucuuuuauguaaaa
acugacgucgaaggacgaaggcaaagggaacaaaaaggauuagauacccc
aguagucuuugcagacaauuaugaaugccauagguuagauuuuuaauuua
gucuauaaaugaaaguguaagcauuucaccucaagaguaaggcggcaacg
caggaacugaaaucacuagaccguuucugacaccagcaaugaaguauguu
auuuaauucggugacccacgaaaaaccuuaccacaauuugaauauuaauu
auuaauacaaguguugcacggcugucuucaguugauguugcgaaacugug
guucguuccauggaauuaacguaaacccuugcuuuauuuguaaauauuau
aaagcaguucaccuuuauauaggaaaugauaaaagggaucaagacaaguc
aucauggccuaaauauugugggcuauagacgugccacauuuuccuaaaca
aagagaugcaaaaaugugaauuuuagcuaaucucaaaaaauaggauaaaa
auauacaaggauuguagucugaaauucgacugcaugaauaagaaauugcu
aguaaucgugaaucaccaugacacggugaauauucccucggauugguacu
aaccacucgucacaugcugaaaggagugcgugcaauaaguuugcuuuucu
guuauaaguaaguagacauauagguuuagauguuauaauaggauccuucg
uaugcgcggcucugauuaguguuaagucgaaauacgguucguguagugga
aguugcacgggacuuaucaauguugaacaauacga
......((((..<<<<<<.))))<<<<<.<<<<<..<<<<<.<<.....<
<<.<<<..<<<..<<.<<<<<<<..<<.>>..>>>>>>>.>>>>>.....
.<<.........<<<<<<<..<<...<<<<<<<<<<<<<.....>>>>>.
..........<<<<<<..>>>>>>>>>>>>>>.>>...(>>>>>>>...<
<<<<..<<<..<<<<<<<<....)..>>>>>>>>>>>......>>>>>..
<<<<.<<<<.....>>>>...>>>>.>>.<<<<<...........>>>>>
.<<......>>...>>>>>>.........<<<....<<<<....>>>>..
>>>..>>..>>>>>.<<<<......<<<<....>>>>.....>>>>....
<<<<<<<<<.......>>>>>>>>>.....<<<<<(((...<<<<<....
.<<.)))>>.......>>>>>>>>>>..>>>>>>>>>>.........<<<
((.....<<..<..<<<.<<<<<<<<.<<<<.......>>>..>>>>>>>
>>...<<<<<......<<<<<<<.<..<<<<<<.<<<..<<<......>>
>.....>>>>>>>>>..>........<<....>>.>>>>>>>......>>
>>>...>>>...>.>>....<<<<<<...<<.....<<.........>>.
....>>>>>>>>..........<<<<<<.<<<<<<<<<<<<...>>>>>>
>>>>>>..<<..))>>....>>>>>>.>>>.<<........<<<....>>
>......>>..>>>>>><<<<<...<<<<<....<<<<<<...<<<<<<<
<<......<<........>>..........<<<<<<<.....<<<<<<<.
>>>>>>>..<<.<<...<.<<<<<<<....<<<<<<<<<....>>>.<<<
<......>>>>...>>>>>>.....<<<<<<<<<<<.............>
>>>>>>..<<.<<<......>>>....>>....>>>>.....>>>.>>>.
..>.>.>>>>....>>>>>>>...>>.>>>>>>>.......<<<<<....
..<<<..<<..<<<<....>>>>..>>....>>>......>>>>>.....
.......<....<<<<<<<........>>>>>>>....>.....>>>>>>
....<<<<<<...........>>>>>>..........>>>>>..>>>.>>
....<.<<<.<..<<<<<<<..<<<<<.<<<<<<....<.......<<<<
<<<<<<<.....<<<<<......>>>>>....>>>>>>>>>>>.....>.
..>>>>>>>>>>>..>>>>>>>...>.>>>..>.....<<<<<<<<<...
.>>>>>>>>>.........................
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6ywx Analysis of translating mitoribosome reveals functional characteristics of translation in mitochondria of fungi.
Resolution3.1 Å
Binding residue
(original residue number in PDB)		L101 R105 P198 G199 G246
Binding residue
(residue number reindexed from 1)		L59 R63 P156 G157 G204
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0004784 superoxide dismutase activity
GO:0046872 metal ion binding
Biological Process
GO:0006801 superoxide metabolic process
GO:0019430 removal of superoxide radicals
Cellular Component
GO:0005737 cytoplasm
GO:0005739 mitochondrion

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6ywx, PDBe:6ywx, PDBj:6ywx
PDBsum6ywx
PubMed33056988
UniProtQ7S2H6|RT26_NEUCR Small ribosomal subunit protein mS42 (Gene Name=rsm26)

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