Structure of PDB 8uu7 Chain 4 Binding Site BS01

Receptor Information
>8uu7 Chain 4 (length=53) Species: 1642 (Listeria innocua) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AVPFRRTSKAKKRKRRTHVKLQLPGMNECSNCGEYRLSHHVCPECGQYDG
KDV
Ligand information
>8uu7 Chain A (length=2909) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
guuaaguuagaaagggcgcacgguggaugccuuggcacuaggagccgaag
aaggacgggacuaacaccgauaugcuuuggggagcuguacguaagcguug
auccagagauuuccgaaugggggaacccacuaucuuuagucggauaguau
ccuuacgugaauacauagcgugaggaaggcagacccagggaacugaaaca
ucuaaguaccuggaggaagagaaagaaaaaucgauuuccugaguagcggc
gagcgaaacggaaagagcccaaaccaagaagcuugcuucuugggguugua
ggacacucuauacggaguuacaaaagaaaguuauaaaugaagcggucugg
aaaggcccgccaaagacgguaacagcccgguaguugaaauggcuuucccu
ccagaguggauccugaguacgacggaacacgugaaauuccgucggaaucc
gggaggaccaucucccaaggcuaaauacucccuagugaccgauagugaac
caguaccgugagggaaaggugaaaagcaccccggaaggggagugaaacag
uuccugaaaccgugugccuacaaguaguuagagcccguuaaugggugaua
gcgugccuuuuguagaaugaaccggcgaguuacgauuuguugcaagguua
agcggaaaaagcggagccguagcgaaagcgagucugaauagggcgcauaa
guaacaggucguagacccgaaaccaggugaucuacccauguccaggauga
agguaagguaauacuuacuggagguccgaacccacgcacguugaaaagug
cggggaugagguguggguagcggagaaauuccaaucgaacuuggagauag
cugguucucuccgaaauagcuuuagggcuagccucgagguaaagagucau
ggagguagagcacuguuuggacuaggggccgguuaccgaauucagauaaa
cuccgaaugccauguacuuauacucgggagucagacugcgagugauaaga
uccguagucgaaagggaaacagcccagaccaccaguuaagguccccaaau
auauguuaaguggaaaaggaugugggguugcuuagacaaccaggauguug
gcuuagaagcagccaccauugaaagagugcguaauagcucacuggucgag
ugaccccgcgccgaaaauguaccggggcuaaacauauuaccgaaacugug
gaugaaccuagguucgugguaggagagcguucuaagggcggugaagucag
accggaaggacugguggagcgcuuagaagugagaaugccgguaugaguag
cgaaagaagggugagaaucccuuccaccgaauaucuaagguuuccugagg
aaggcucguccgcucaggguuagucgggaccuaagccgaggccgauaggc
guaggcgauggacaacagguagagauuccuguaccagugcuaauuguuua
accgauggggugacacagaaggauagggaaucgcacgaauggaaaugugc
guccaagcagugagugugagaaguaggcaaauccgcuucuugcgaagcau
gagcugugauggggaaggguacggaaguuccugauuucacgcugucaaga
aaagccucuaggaagaguaguacugcccguaccgcaaaccgacacaggua
gaugaggagagaauccuaaggugagcgagagaacucucguuaaggaacuc
ggcaaaaugaccccguaacuucgggagaaggggugcucuauuagggugca
agcccgagagagccgcagugaauaggcccaggcgacuguuuagcaaaaac
acaggucucugcaaaaccguaaggugacguauaggggcugacgccugccc
ggugcuggaagguuaagaggagugcuuagcuucggcgaagguacgaauug
aagccccaguaaacggcggccguaacuauaacgguccuaagguagcgaaa
uuccuugucggguaaguuccgacccgcacgaaaggcgcaacgaucugggc
acugucucaacgagagacucggugaaauuauaguaccugugaagaugcag
guuacccgcgacaggacggaaagaccccguggagcuuuacugcaaccuga
uauggaauguuuguaccgcuuguacaggauagguaggagccgaagagacg
ugugcgcuagcauacgaggaggcaauggugggauacuacccuggcuguau
gaccauucuaacccgccacgcuaagcgcguggggagacagugucaggugg
gcaguuugacuggggcggucgccuccuaaagaguaacggaggcgcccaaa
gguucccucagaauggauggaaaucauucgcagaguguaaaggcacaagg
gagcuugacugcgagacugacaagucgagcagggacgaaagucgggcuua
gugauccggugguuccgcauggaagggccaucgcucaacggauaaaagcu
accccggggauaacaggcuuaucucccccaagaguccacaucgacgggga
gguuuggcaccucgaugucggcucgucgcauccuggggcuguagucgguc
ccaaggguugggcuguucgcccauuaaagcggcacgcgagcuggguucag
aacgucgugagacaguucggucccuauccgucgcgggcgcaggaaauuug
agaggagcuguccuuaguacgagaggaccgggauggacacaccgcuggug
uaccaguuguuccgccaggagcaucgcuggguagcuauguguggcaggga
uaaacgcugaaagcaucuaagcgugaagccccccucaagaugagauuucc
cauuucuucggaaaguaagaucccugaaagaugaucagguagauagguuu
ggaguggaaguguagcgauacauggagcggacaaauacuaaucgaucgag
gacuuaacc
<<<<<<<......<<<<<<<<<<<....{[[..[[<<<<<<<[[<<....
..<<<<<<.((..((.>>>.....<<<<<<<..<<<))..)).>>>....
.>>>>>>>...>>>....<<<....>>><<<<<<<......>>>>>>>.<
<<<<<<<<.........>>>>>>>>>.>>....<<<<<<.....<.....
.>......>>>>>.>.........<<....>>..<<<<<......<<...
..>>.....>>>>>..(((....<<<<<<<<....>>>>>>>>......<
<<<<<<<<<....<<<<........<<<<<<<<<.<<<.....<<<<...
...>>>>.((......<<<.....))>>>...>>>...>>>>>>>>>.>>
>>>>>>>>..>>>>.....<<<<<<<<.........>>>>>>>>......
<<<<<..<<<<>>>>>..)))......]].>>>>>>>.]]..........
.....<<....>>....]].........<<<<....>>>>..........
...}....>>>>>>>>>>>.......<<<<..<<<<......>>>>..>>
>>...<.<........>.>.<<<<<<....<<<<<<<<<<<<<..<<<..
.<<.......>>...>>>...<<....>>..<<<<.....>>>>......
>>>>>>>>>>>>>..<<.<..<<<<<<<.....<<<<<<<<<..<<<...
.<<<<<<......>>>>>>.....>>>...<<<.<<<<<........>>>
>>>>>....>>>>>>>>>...<<<.....>>>......>>>>>>...>..
>.>>..<<<<<<....<<<<<....>>>>><<<<<<<<.....<<<<<<<
<<.....<<<...<<<<<<<<...<<.<<..>>..>>...>>>>>>>>..
>>.>.....>>>>>.>>>>...>>>>>>.>>..<<<<<<<.<<......>
>.>>>>>>>....<<<......>>>...<<<<.<<<...<<<(((.....
<<<<<<...........<<..<<<<<<<<<........<<<<<.<<...<
<<<.......>>>>...>>.........<<......>>...>>>>>....
>>>>>>>>>.>>...........))).....>>>>>>.>>>...>>>>>>
><<<<<<<..>>>>>>>....>>>>>><.<<<<<<<.<<......<<<<<
.<<....>>.>>>>>...>>.>>>>>>>..>.....>>>>>><......<
<....<<<<<<.......>>>>>><<<<....<<<<<.<<...<<<<<<.
..<<.....>>.>>>>>>....((<<<<.<<...<<<...<<<....>>>
...>>>...>>...<<<<<........>>>>>))<<<<<<<<.<<.....
.<<...<<<<<...<<<<..<<<..<<<<<.<<<<<...(((....>>>>
>.<<..<<<<<..<<<<<<<<<<<.<<.....>>>>>>>>>.....>>>>
..>>>>>...>>....<....>.....>>>>>...>>>...>>>>.....
...>>>>>..>>..>>.>>>>>>>>>>>>..>>.....<<......>>>>
>>>.<<<<.....>>>>..>>>>..<<<<....<<<<<<<<.<<......
...<.....<<<<<....<<..>>.....>>>>><<<<<....<<<<...
.>>>>...>>>>>............<<<<<<<<<..<<<.........>>
>..<<<<<<<.....<<<....>>>.......>>>>>>>..<<<<.<<<.
.<<<<<<<..<<<...<<...<<<<<<.<<....>>..>>>>>>...>>.
..>>>>>>>>..>>>>><<<<<<.......>>>>>>........<.....
......<<<<<.......>>>>>.....>....>>>>...>>.>>>>>>>
..>..>>.>>>>>>>>.>>>>>>.....>.....<<<<<........>>>
>>..<<<<<<<<.(((.[[......<<<<.[[<<<<..<<<<<.<<<<<<
<<<.<<<<<.<<<<<<.<<<...........<<<<<..<<<.......<<
<<<<<....>>>>>>>....>>>............>>>>>..>>>.>>>>
>>.>>>>>....<<.<<<<<<.....>>>>>>>>.....>>>>>>>>>..
>>>>>..<<<<.....>>>><<<<<<...........>>>>>>..<<...
<<<<<<<...<<<<<<.......>>>>>>.....<<.[.(((>>....>>
>>>>>...<<<<..<<<<....>>>>..>>>>.<<<....>>>.>>)))]
......<<<<<<<.((..>>>>..))>>>>>>>.............>>>>
..]]>>>>.......<<<<.<.<<<<<<...<<.......>>...>>>>>
>...>>>>.>.......<<<<<.<<<<<<..<<<<<<<<<......>>>>
>>..>>>.<<<<<.....>>>>>.....>>>>>..>...>>>.>>....<
<<<<<<....>>>.>>>>....]]..)))>>>>>>>>....<<<<<<<..
.<<<<..<<<<<<<...............>>>>>>>.<<<<<...<<<<.
..<<<<<<<<<<<.)))>>>>>>..>>>>>...>>>>.>>>>>...<<<.
...<<<<<...........>>>>>....>>>.>>>>.......>>>>>>>
..<<<<<..>>>>>....<<<<<<<<<.......>>>>>....<<<<<<<
<..<<....<<<<<....>>>>>...>>...>>>>>.>>>...>>>>...
.>>>>>>>.
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8uu7 Mechanistic insights into the alternative ribosome recycling by HflXr.
Resolution3.2 Å
Binding residue
(original residue number in PDB)
A2 V3 P4 F5 R6 R7 T8 S9 K10 K12 K13 R14 R16 R17 T18 N28 R37 H40 Y49
Binding residue
(residue number reindexed from 1)
A1 V2 P3 F4 R5 R6 T7 S8 K9 K11 K12 R13 R15 R16 T17 N27 R36 H39 Y48
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015934 large ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:8uu7, PDBe:8uu7, PDBj:8uu7
PDBsum8uu7
PubMed38407413
UniProtA0A660JNN0

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