Structure of PDB 6spf Chain 4 Binding Site BS01

Receptor Information
>6spf Chain 4 (length=44) Species: 287 (Pseudomonas aeruginosa) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MKRTFQPSTLKRARVHGFRARMATKNGRQVLSRRRAKGRKRLTV
Ligand information
>6spf Chain A (length=2885) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
gucaagugaagaagcgcauacgguggaugccuuggcagucagaggcgaug
aaagacgugguagccugcgaaaagcuucggggagucggcaaacagacuuu
gauccggagaucucugaaugggggaacccaccuaggauaaccuagguauc
uuguacugaauccauaggugcaagaggcgaaccaggggaacugaaacauc
uaaguacccugaggaaaagaaaucaaccgagauucccuuaguaguggcga
gcgaacggggauuagcccuuaagcuucauugauuuuagcggaacgcucug
gaaagugcggccauagugggugauagccccguacgcgaaaggaucuuuga
agugaaaucaaguaggacggagcacgagaaacuuugucugaacauggggg
gaccauccuccaaggcuaaauacuacugacugaccgauagugaaccagua
ccgugagggaaaggcgaaaagaaccccggagaggggagugaaauagaacc
ugaaaccguaugcguacaagcagugggagccuacuuguuaggugacugcg
uaccuuuuguauaaugggucagcgacuuauauucaguggcaagcuuaacc
guauaggguaggcguagcgaaagcgagucuuaauagggcguuuagucgcu
ggguauagacccgaaaccgggcgaucuauccaugagcagguugaagguua
gguaacacugacuggaggaccgaacccacucccguugaaaagguagggga
ugacuuguggaucggagugaaaggcuaaucaagcucggagauagcugguu
cuccucgaaagcuauuuagguagcgccucauguaucacucugggggguag
agcacuguuucggcuagggggucaucccgacuuaccaaaccgaugcaaac
uccgaauacccagaagugccgagcaugggagacacacggcgggugcuaac
guccgucgugaaaagggaaacaacccagaccgccagcuaaggucccaaag
uugugguuaagugguaaacgaugugggaaggcuuagacagcuaggagguu
ggcuuagaagcagccacccuuuaaagaaagcguaauagcucacuagucga
gucggccugcgcggaagauguaacggggcucaaaccacacaccgaagcug
cgggugucacguaagugacgcgguagaggagcguucuguaagccugugaa
ggugaguugagaagcuugcuggagguaucagaagugcgaaugcugacaug
aguaacgacaaugggugugaaaaacacccacgccgaaagaccaaggguuc
cugcgcaacguuaaucgacgcaggguuagucgguuccuaaggcgaggcug
aaaagcguagucgaugggaaacagguuaauauuccuguacuucugguuac
ugcgauggagggacggagaaggcuaggccagcuuggcguugguuguccaa
guuuaaggugguaggcugaaaucuuagguaaauccgggguuucaaggccg
agagcugaugacgagucgucuagaugacgaagugguugaugccaugcuuc
caagaaaagcuucuaagcuucagguaaccaggaaccguaccccaaaccga
cacagguggucggguagagaauaccaaggcgcuugagagaacucggguga
aggaacuaggcaaaauggcaccguaacuucgggagaaggugcgccggcua
gggugaaggauuuacuccguaagcucuggcuggucgaagauaccaggccg
cugcgacuguuuauuaaaaacacagcacucugcaaacacgaaaguggacg
uauagggugugacgccugcccggugccggaagguuaauugaugggguuag
cgcaagcgaagcucuugaucgaagccccgguaaacggcggccguaacuau
aacgguccuaagguagcgaaauuccuugucggguaaguuccgaccugcac
gaauggcguaacgauggcggcgcugucuccacccgagacucagugaaauu
gaaaucgcugugaagaugcaguguauccgcggcuagacggaaagaccccg
ugaaccuuuacuguagcuuugcacuggacuuugagccugcuuguguagga
uaggugggaggcuuugaagcguggacgccaguucgcguggagccauccuu
gaaauaccacccuggcaugcuugagguucuaacucugguccguaauccgg
aucgaggacaguguauggugggcaguuugacuggggcggucuccuccuaa
agaguaacggaggaguacgaaggugcgcucagaccggucggaaaucgguc
gcagaguauaaaggcaaaagcgcgcuugacugcgagacagacacgucgag
cagguacgaaaguaggucuuagugauccggugguucuguauggaagggcc
aucgcucaacggauaaaagguacuccggggauaacaggcugauaccgccc
aagaguucauaucgacggcgguguuuggcaccucgaugucggcucaucac
auccuggggcugaagccggucccaaggguauggcuguucgccauuuaaag
ugguacgcgagcuggguuuagaacgucgugagacaguucggucccuaucu
gccguggacguuugagauuugagaggggcugcuccuaguacgagaggacc
ggaguggacgaaccucugguguuccgguugucacgccaguggcauugccg
gguagcuauguucggaaaagauaaccgcugaaagcaucuaagcgggaaac
uugccucaagaugagaucucacugggaacuugauuccccugaagggccgu
cgaagacuacgacguugauaggcuggguguguaagcguugugaggcguug
agcuaaccaguacuaauggcccgugaggcuugacc
<<<<<<<......<<<<<<<<<<<.....[[..[[<<<<<<<[[<<....
..<<<<<<.[..(((.>>>.....<<<<<<<..<<<)))...].>>>...
..>>>>>>>...>>>....<<<....>>><<<<<<<....>>>>>>>.<<
<<<<<<<.........>>>>>>>>>.>>...<<<<<<.....<<....>>
......>>>>>.>.........<<....>>...<<<<<.....<<.....
>>....>>>>>...(((.....<<<<<<..<<<<<..<<<...<<<....
......>>>((......<<<.....))>>>...>>>....>>>>>..>>>
>>>...........<<<<<<<<.........>>>>>>>>......<<<<<
..<<<<>>>>>..)))......]].>>>>>>>.]]...............
<<....>>....]].........<<<<.....>>>>..............
....>>>>>>>>>>>.......<<<<..<<<<<.....>>>>>..>>>>.
..<.<........>.>.<<<<<<....<<<<<<<<<<<<<..<<<...<<
.....>>...>>>...<<....>>..<<.<.....>.>>.....>>>>>>
>>>>>>>..<<.<..<<<<<<<.....<<<<<<<<<..<<<....<<<<<
<......>>>>>>.....>>>...<<<.<<.<<........>>.>>>>>.
...>>>>>>>>>...<<<.....>>>......>>>>>>...>..>.>>..
<<<<<<....<<<<<....>>>>>.<<<<<<<<..<<<<<<<<<.....<
<<...<<<.<<<<...<<................>>...>>>>.>>>..>
>.>.....>>>>>>.>>>....>>>>>>>.>...<<<<<<<<<<......
>>>>>>>>>>....<<<......>>>...<<<<.<<<...<<<(((....
.<<<<<<...........<<..<<<<<..<<...................
..................................................
.>>..>>>>>.>>...........)))......>>>>>>.>>>...>>>>
>>><<<<<<......>>>>>>....>>>>>>..<<<<<...<<<......
<<<<<<<<....>>>>>>>>...>>>..>>>>>........>>>>>><..
....<<.....<<<<<<.......>>>>>><<<<....<<<<<.<<...<
<<<<<...<<.....>>.>>>>>>....((<<<<<<<...<<<...<<<.
...>>>...>>>...>>>..<<<<<........>>>>>))<<<<<<<<<<
.<<...<<<<....<<<<..<<<..<<<<<..<<<<...((((...>>>>
..<<...<<....<<<<<<<<<<<..<<.....>>.>>>>>>>..>>>>.
...>>....>><..<<<.<<..>>.>>>...>>>>>>...>>>...>>>>
.........>>>>...>>.....>>>>>>>>>>>>>>..>>.....<<..
....>>>>>>>.<<<<.....>>>>..>>>>..<<<<....<<<<<<<<.
<<...............<<<<<....<<..>>.....>>>>><<<<<<<<
<<<<...<<<.....>>>....>>>>>>>>>>>>............<<<<
<<<<<..<<<.........>>>..<<<<<<<.....<<<....>>>....
...>>>>>>>.<<<<<.<<<..<<<<<<<..<<<<.......<<<<<<.<
<....>>..>>>>>>.......>>>>>>>>>..>>>>><<..........
.....>>........<...........<<<<<<.....>>>>>>.....>
....>>>>>..>>.>>>>>>>.....>>.>>>>>>>>.>>>>>>.....>
.....<<<<<........>>>>>..<<<<<<<<.(((.[[......<<<<
.[[<<<<..<<<<<.<<<.<<<<<.<<.<<<<<<<<.<.<..........
..<<<<................<<<<....>>>>................
.......>>>>...>.>.>>>>>>>>.>>...<<<.<<<<<<.....>>>
>>>>>>....>>>>>.>>>..>>>>>..<<<<.....>>>><<<<<<...
........>>>>>>..<<.....<<<<<...<<<<<.........>>>>>
.....<<.[.(((>>....>>>>>.....<<<<..<<<......>>>..>
>>>.<<<....>>>.>>)))]......<<<<<<<.((..>>>>..))>>>
>>>>.............>>>>..]]>>>>.......<<<<.<.<<<<<<.
..<<.......>>...>>>>>>...>>>>.>.......<<<<<.<<<<<<
..<<<<<<<<<......>>>>>>..>>>.<<<<<.....>>>>>.....>
>>>>..>...>>>.>>....<<<<<<<....>>>.>>>>....]]..)))
>>>>>>>>....<<<<<<<...<<<<..<<<<<<<...............
>>>>>>>.<<<<<...<<<<...<<<<<<<<<<<))))>>>>>>..>>>>
>...>>>>.>>>>>...<<<....<<<<<...........>>>>>....>
>>.>>>>.......>>>>>>>..<<<<<.....>>>>>.....<<..<<<
<<.......>>>>>....<<<.<<<<.<<<.....<<<......>>>...
.>>.>.>>>>..>>>.....>>.....>>>>>>>.
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6spf Structure ofPseudomonas aeruginosaribosomes from an aminoglycoside-resistant clinical isolate.
Resolution2.89 Å
Binding residue
(original residue number in PDB)
M1 K2 R3 T4 F5 Q6 P7 S8 T9 L10 K11 R12 A13 R14 V15 H16 G17 F18 R19 R21 M22 K25 N26 V30 R33 R34 R35 K37 G38 R39 K40 R41 L42
Binding residue
(residue number reindexed from 1)
M1 K2 R3 T4 F5 Q6 P7 S8 T9 L10 K11 R12 A13 R14 V15 H16 G17 F18 R19 R21 M22 K25 N26 V30 R33 R34 R35 K37 G38 R39 K40 R41 L42
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function

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Biological Process

View graph for
Cellular Component
External links
PDB RCSB:6spf, PDBe:6spf, PDBj:6spf
PDBsum6spf
PubMed31611393
UniProtA0A087L9L7

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