Structure of PDB 6lqt Chain 3G Binding Site BS01

Receptor Information
>6lqt Chain 3G (length=121) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NPKAFPLADAALTQQILDVVQQAANLRQLKKGANEATKTLNRGISEFIIM
AADCEPIEILLHLPLLCEDKNVPYVFVPSRVALGRACGVSRPVIAASITT
NDASAIKTQIYAVKDKIETLL
Ligand information
>6lqt Chain 3A (length=194) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
gucgacguacuucauaggaucauuucuauaggaaucgucacucuuugacu
cuucaaaagagccacugaauccaacuugguugaugagucccauaaccuuu
guaccccagagugagaaauugccguugcauuuuauggcgcgaugaucuug
acccauccuauagggggguggguacaaauggcagucugacaagu
..................................................
.......................<<<<<.................<<<<<
<<..<<....<.........<<<............>>>........>...
<<<..<<<<..>>>>.>>>.>>.>>>>>.>>........>>>>>
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6lqt Cryo-EM structure of 90 S small ribosomal subunit precursors in transition states.
Resolution4.9 Å
Binding residue
(original residue number in PDB)		K35 G36 A37 N38 E39 K42 C58 E59 I63 R95 V97 I98
Binding residue
(residue number reindexed from 1)		K31 G32 A33 N34 E35 K38 C54 E55 I59 R91 V93 I94
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0005515 protein binding
GO:0030621 U4 snRNA binding
GO:0034511 U3 snoRNA binding
Biological Process
GO:0000245 spliceosomal complex assembly
GO:0000398 mRNA splicing, via spliceosome
GO:0000452 snoRNA guided rRNA 2'-O-methylation
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000494 box C/D sno(s)RNA 3'-end processing
GO:0006364 rRNA processing
GO:0006397 mRNA processing
GO:0008380 RNA splicing
GO:0030490 maturation of SSU-rRNA
GO:0042254 ribosome biogenesis
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005681 spliceosomal complex
GO:0005687 U4 snRNP
GO:0005730 nucleolus
GO:0031428 box C/D methylation guide snoRNP complex
GO:0032040 small-subunit processome
GO:0046540 U4/U6 x U5 tri-snRNP complex
GO:0071001 U4/U6 snRNP
GO:0071011 precatalytic spliceosome
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6lqt, PDBe:6lqt, PDBj:6lqt
PDBsum6lqt
PubMed32943522
UniProtP39990|SNU13_YEAST 13 kDa ribonucleoprotein-associated protein (Gene Name=SNU13)

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