Structure of PDB 6lqs Chain 3E Binding Site BS01

Receptor Information
>6lqs Chain 3E (length=432) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
YVLTETSAGYALLKASDKKIYKSSSLIQDLDSSDKVLKEFKIAAFSKFNS
AANALEEANSIIEGKVSSQLEKLLEEIKKDKKSTLIVSETKLANAINKLG
LNFNVVVTLDIYRAIKEYLPELLPGMSDNDLSKMSLGLAHSIGRHKLKFS
ADKVDVMIIQAIALLDDLDKELNTYAMRCKEWYGWHFPELAKIVTDSVAY
ARIILTMGIRSKASETDLSEILPEEIEERVKTAAEVSMGTEITQTDLDNI
NALAEQIVEFAAYREQLSNYLSARMKAIAPNLTQLVGELVGARLIAHSGS
LISLAKSPASTIQILGAEKALFRALKTKHDTPKYGLLYHASLVGQATGKN
KGKIARVLAAKAAVSLRYDALAEDRDDSGDIGLESRAKVENRLSQLEGRD
LRTTPKVVREAKKVEMTEARAYNADADTAKAA
Ligand information
>6lqs Chain 3A (length=234) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
gucgacguacuucauaggaucauuucuauaggaaucgucacucuuugacu
cuucaaaagagccacugaauccaacuugguugaugagucccauaaccuuu
guaccccagagugagaaauagcuuggccgaaucgguucggccacuauauu
gccguugcauuuuauggcgcgaugaucuugacccauccuaucuucgaaga
uagggggguggguacaaauggcagucugacaagu
..................................................
.......................<<<<<.................<<<<<
<<..<<....<............<<<<<<<<<..>>>>>>>>>.......
<<<............>>>........>...<<<..<<<<<<<<<..>>>>
>>>>>.>>>.>>.>>>>>.>>........>>>>>
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6lqs Cryo-EM structure of 90 S small ribosomal subunit precursors in transition states.
Resolution3.8 Å
Binding residue
(original residue number in PDB)		R298 H302 S315 T316 Q318 I319 A322 E323 K324 F327 R328 H334 D335 T336 P337 K338 Y339 Y343 K354 G357 K358 R361 A365 K366 R397 R404 K411
Binding residue
(residue number reindexed from 1)		R293 H297 S310 T311 Q313 I314 A317 E318 K319 F322 R323 H329 D330 T331 P332 K333 Y334 Y338 K349 G352 K353 R356 A360 K361 R392 R399 K406
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003729 mRNA binding
GO:0005515 protein binding
GO:0017069 snRNA binding
GO:0030515 snoRNA binding
Biological Process
GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000452 snoRNA guided rRNA 2'-O-methylation
GO:0000472 endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000480 endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000494 box C/D sno(s)RNA 3'-end processing
GO:0006364 rRNA processing
GO:0030490 maturation of SSU-rRNA
GO:0042254 ribosome biogenesis
GO:1902570 protein localization to nucleolus
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005730 nucleolus
GO:0030686 90S preribosome
GO:0031428 box C/D methylation guide snoRNP complex
GO:0032040 small-subunit processome
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6lqs, PDBe:6lqs, PDBj:6lqs
PDBsum6lqs
PubMed32943522
UniProtQ12499|NOP58_YEAST Nucleolar protein 58 (Gene Name=NOP58)

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