Structure of PDB 7pnt Chain 3 Binding Site BS01

Receptor Information
>7pnt Chain 3 (length=50) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TRFLRRKVREGRLKKKQIKFEKDLKRIWLKAGLKEAPENWQTPKIYLKNK
Ligand information
>7pnt Chain A (length=909) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aaagguuugguccuggccuuauaauuaauuagagguaaaauuacacaugc
aaaccuccauagaccgguguaaaaucccuuaaacauuuacuuaaaauuua
aggagaggguaucaagcacauuaaaauagcuuaagacaccuugccuagcc
acacccccacgggacucagcagugauaaauauuaagcaauaaacgaaagu
uugacuaaguuauaccucuuaggguugguaaauuucgugccagccaccgc
ggucauacgauuaacccaaacuaauuaucuucggcguaaaacgugucaac
uauaaauaaauaaauagaauuaaaauccaacuuauaugugaaaauucauu
guuaggaccuaaacucaauaacgaaaguaauucuagucauuuauaauaca
cgacagcuaagacccaaacugggauuagauaccccacuaugcuuagccau
aaaccuaaauaauuaaauuuaacaaaacuauuugccagagaacuacuagc
cauagcuuaaaacucaaaggacuuggcgguacuuuauauccaucuagagg
agccuguucuauaaucgauaaaccccgcucuaccucaccaucucuugcua
auucagccuauauaccgccaucuucagcaaacccuaaaaagguauuaaag
uaagcaaaagaaucaaacauaaaaacguuaggucaagguguagccaauga
aaugggaagaaaugggcuacauuuucuuauaaaagaacauuacuauaccc
uuuaugaaacuaaaggacuaaggaggauuuaguaguaaauuaagaauaga
gagcuuaauugaauugagcaaugaaguacgcacaccccuccuaaauuaaa
cuuaacauaauuaauuucuacguuuauggagauaaaagcauacugagugu
gcuuggaau
..((((..<<<<<<.)))).<<<<<<<.<..<<<<<<<<....<<<.<<<
..<......>......<<......<<<<<<<<<..<<<....>>>.>>>>
>>>.>>.<<<....<<...<<....>>..>>......>>>..<<...>>.
>>.<<<....>>>.....>>>>>>..........<<....<<<<....>>
>>..>>...>>.>>>>>>...<<<<<<<<.....(((.....((.>>>))
.......)))..>>>>>..>.>>>>>>>....<<<((.....<<<<....
<<............<<<<<<....<<<<<<<....<<......>>.....
>>>.>>>..>..........<<....>>.>>>>>>......>>....>>>
>....<<<<<<...<<...<<<<.........>>>>...>>>>>>>>...
.......<<<<.<<.......))..>>.>>>>.>>>.<<<.......<<<
....>>>.....>>>..>>>>>>.<<<<...<<<<........<<<<<..
<<<<<<<<<<.....<<........>>..........<<<<.<<......
.....<<.<<<..<<<<<<.......<<..<<<<<....>>>.......>
>..>>......<<.....>>..........>>>...>>>>>>>>....>>
.>>>>..>>.>>>>>>>>.....<<<<<....>>>>>.....<<..<.<<
<<<<......>>>>>>..>.>>.....>>>>>.....<<<<<<<......
...>>>>>>>............>>>>..>>>.>....<<<<<<<<<....
......<<.....>>......>>>>>.>>>>....<<<<<<<<<.>>>>>
>>>>.....
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7pnt Mechanism of mitoribosomal small subunit biogenesis and preinitiation.
Resolution3.19 Å
Binding residue
(original residue number in PDB)		R152 R156 R159 R162 K166 K172 Y196
Binding residue
(residue number reindexed from 1)		R2 R6 R9 R12 K16 K22 Y46
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003674 molecular_function
GO:0004842 ubiquitin-protein transferase activity
Biological Process
GO:0016567 protein ubiquitination
GO:0032543 mitochondrial translation
GO:0045862 positive regulation of proteolysis
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005680 anaphase-promoting complex
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0005759 mitochondrial matrix
GO:0005763 mitochondrial small ribosomal subunit
GO:0005840 ribosome
GO:0043231 intracellular membrane-bounded organelle
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7pnt, PDBe:7pnt, PDBj:7pnt
PDBsum7pnt
PubMed35676484
UniProtQ9DCJ7|AKIP_MOUSE Small ribosomal subunit protein mS38 (Gene Name=Aurkaip1)

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