Structure of PDB 6ip6 Chain 2x Binding Site BS01 |
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>6ip6 Chain 2m (length=1742)
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uaccugguugauccugccaguagcauaugcuugucucaaagauuaagcca ugcaugucuaaguacgcacggccgguacagugaaacugcgaauggcucau uaaaucaguuaugguuccuuuggucgcucgcuccucucccacuuggauaa cugugguaauucuagagcuaauacaugccgacgggcgcugacccccuucg cgggggggaugcgugcauuuaucaguggugacucuagauaaccucgggcc gaucgcacgccccccguggcggcgacgacccauucgaacgucugcccuau caacuuucgaugguagucgccgugccuaccauggugaccacgggugacgg ggaaucaggguucgauuccggagagggagccugagaaacggcuaccacau ccaaggaaggcagcaggcgcgcaaauuacccacucccgacccggggaggu agugacgaaaaauaacaauacaggacucuuucgaggcccuguaauuggaa ugaguccacuuuaaauccuuccgcgaggauccauuggagggcaagucugg ugccagcagccgcgguaauuccagcuccaauagcguauauuaaaguugcu gcaguuaaaaagcucguaguuggaucuugggagcgggcguccccgccgcc ucucggccggggcccgaagcauuuacuuugaaaaaauuagaguguucaaa gcaggcccgagccgccuggauaccgcagcuaggaauaauggaauaggacc gcgguucuauuuuguugguuuucggaacugaggccaugauuaagagggac ggccgggggcauucguauugcgccgcuagaggugaaauucuuggaccggc gcaagacggaccagagcgaaagcauuugccaagaauguuuucauuaauca agaacgaaagucggagguucgaagacgaucagauaccgucguaguuccga ccauaaacgaugccgacuggcgaugcggcggcguuauucccaugacccgc cgggcagcuuccgggaaaccaaagucuuuggguuccggggggaguauggu ugcaaagcugaaacuuaaaggaauugacggaagggcaccaccaggagugg agccugcggcuuaauuugacucaacacgggaaaccucacccggcccggac acggacaggauugacagauugauagcucuuucucgauuccguggguggug gugcauggccguucuuaguugguggagcgauuugucugguuaauuccgau aacgaacgagacucuggcaugcuaacuaguuacgcgacccccgagcgguc ggcgucccccaacuucuuagagggacaaguggcguucagccacccgagau ugagcaauaacaggucugugaugcccuuagauguccggggcugcacgcgc gcuacacugacuggcucagcgugugccuacccuacgccggcaggcgcggg uaacccguugaaccccauucgugauggggaucggggauugcaauuauucc ccaugaacgaggaauucccaguaagugcgggucauaagcuugcguugauu aagucccugcccuuuguacacaccgcccgucgcuacuaccgauuggaugg uuuagugaggcccucggaucggccccgccggggucggcccacggcccugg cggagcgcugagaagacggucgaacuugacuaucuagaggaaguaaaagu cguaacaagguuuccguaggugaaccugcggaaggaucauua |
...<<<<<.[.((((>>>>><<<.<<<<<<...<.<<..<......<<<. <<<..<<....<<....<<..........>>...>>.>>......<<... .....<<<........<...<<<....................<<..... <<.<<<.....>>>.>>......>>.........<<<<...<<<<<<... .>>>>>>...>>>><...<<<<<...<......>..>>>>>........> ..<<<<..<<<......>>>.>>>>....>>>...>.....>>>.<<<.. ..<<<....<<<<<<<.........>>>>>>>>>>......>>>...<<< .<<<<....>>>>....>>>.>>.<<.<<<..........>>>.>>...< <....>>.....>>>>>>.........<<<....<<<.....>>>..>>> ..>...>>.>.....<<....<<<............>>.>.....>>... ...<<..<...........>..>>.........<<<<<((......<<<< .....<<..))>>.......>>>>.>>>>>..>>>>>>.>>>........ .<.<((.....<.<<...<<<.<<.......................... ......................<<<<<<.<.......<<...<....... >.<<<<.......>>>>...>>......>.>>>..>>>.......<<... .<<..<<................>>...>>...>>....>>....<<<<< <..<...<<<<..<<..<<<<<<<<...<<<......>>>......>>>> >>>>..>>.......<<....>>...>>>>..>..>>>.>>>...>>>.. .>>.>....<<<<<<<...<...<<<<.<.....>.>>>>...>>>>>>> >..........<<<.<<.<<<..<.<<<<<<.<<<........>>>>>>> >>.>..>>>...<<..))>>...>>.....>>>.>.>.<<.......<<< <....>>>>.....>>..)))).]<<<<<.<<<<<<<..<<..<<<<<.< <<<.<<<<<<......<<........>>..........<<<<<......< <<<<........<<..<<........>>..>>......>>>>>...<<.< <<..<<.<<<<<<....<<<.<<<<......>>...<<<......>>>.. .>>.>>>....<<<...<...<<<<................<........ >...............>>>>..>.....<<<<<.....>>>>>....... .>>>....>>>.>>>.....>>>>>>>.......>>>>>...>>.>>>>. >>>.>...<<.<<<................<<<.<<<<....>>>>.>>> ..............>>>.>>......<.....<<<<<..........>>> >>.....>.....>>>>>.....<<<<<<<<.......>>>>>>>>.... ..>>...>>>>>>>>>>.>>....<..<<.<..<<<<.<<....<<<<<< <<.<<<..<<<<.<<...<<<<<...<<<...................>> >.....>>>>>...>>.>>>>..>>>.>>>>>>>>...>>.>>>>...>. >>...>.....<<<<<<<<<....>>>>>>>>>......... |
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PDB | 6ip6 HCV IRES Captures an Actively Translating 80S Ribosome. |
Resolution | 4.5 Å |
Binding residue (original residue number in PDB) | M1 P2 Q11 V12 F13 R15 K17 T18 H24 K26 K33 R37 I42 P44 R45 R69 R71 G74 G75 G76 H77 V78 A79 P124 R125 R126 C127 E128 S129 K130 K131 F132 G136 A137 R138 A139 R140 Y141 Q142 K143 Y145 R146 |
Binding residue (residue number reindexed from 1) | M1 P2 Q11 V12 F13 R15 K17 T18 H24 K26 K33 R37 I42 P44 R45 R69 R71 G74 G75 G76 H77 V78 A79 P124 R125 R126 C127 E128 S129 K130 K131 F132 G136 A137 R138 A139 R140 Y141 Q142 K143 Y145 R146 |
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Enzyme Commision number |
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