Structure of PDB 6ip6 Chain 2Y Binding Site BS01 |
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>6ip6 Chain 1A (length=3667)
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cgcgaccucagaucagacguggcgacccgcugaauuuaagcauauuaguc agcggaggagaagaaacuaaccaggauucccucaguaacggcgagugaac agggaagagcccagcgccgaauccccgccccgcggcggggcgcgggacau guggcguacggaagacccgcuccccggcgccgcucguggggggcccaagu ccuucugaucgaggcccagcccguggacggugugaggccgguagcggccc ccggcgcgccgggcccgggucuucccggagucggguugcuugggaaugca gcccaaagcgggugguaaacuccaucuaaggcuaaauaccggcacgagac cgauagucaacaaguaccguaagggaaaguugaaaagaacuuugaagaga gaguucaagagggcgugaaaccguuaagagguaaacgggugggguccgcg caguccgcccggaggauucaacccggcggcggguccggccgugucggcgg cccggcggaucuuucccgcgcgggggaccgucccccgaccggcgaccggc cgccgccgggcgcauuuccaccgcggcggugcgccgcgaccggcuccggg acggcugggaaggcccggcggggaagguggcucgggggcccccgaguguu acagcccccccggcagcagcacucgccgaaucccggggccgagggagcga gacccgucgccgcgcucuccccccucccggcgcgccggggggggccgggc caccccucccacggcgcgaccgcucggggcggacuguccccagugcgccc cgggcgggucgcgccgucgggcccgggggaggccacgcgcgcgucccccg aagagggggacggcggagcgagcgcacggggucggcggcgacgucggcua cccacccgacccgucuugaaacacggaccaaggagucuaacacgugcgcg agucgggggcucgcacgaaagccgccguggcgcaaugaaggugaaggccg gcgcgcucgccggccgaggugggaucccgaggccucuccaguccgccgag ggcgcaccaccggcccgucucgcccgccgcgccggggagguggagcacga gcgcacguguuaggacccgaaagauggugaacuaugccugggcagggcga agccagaggaaacucugguggagguccguagcgguccugacgugcaaauc ggucguccgaccuggguauaggggcgaaagacuaaucgaaccaucuagua gcugguucccuccgaaguuucccucaggauagcuggcgcucucgcagacc cgacgcccgccacgcaguuuuauccgguaaagcgaaugauuagaggucuu ggggccgaaacgaucucaaccuauucucaaacuuuaaauggguaagaagc ccggcucgcuggcguggagccgggcguggaaugcgagugccuagugggcc acuuuugguaagcagaacuggcgcugcgggaugaaccgaacgccggguua aggcgcccgaugccgacgcucaucagaccccagaaaagguguugguugau auagacagcaggacgguggccauggaagucggaauccgcuaaggagugug uaacaacucaccugccgaaucaacuagcccugaaaauggauggcgcugga gcgucgggcccauacccggccgucgccggcagucgagaguggacgggagc ggcggcccggagccccgcggacgcuacgccgcgacgaguaggagggccgc ugcggugagccuugaagccuagggcgcgggcccggguggagccgccgcag gugcagaucuuggugguaguagcaaauauucaaacgagaacuuugaaggc cgaaguggagaaggguuccaugugaacagcaguugaacaugggucagucg guccugagagaugggcgagcgccguuccgaagggacgggcgauggccucc guugcccucggccgaucgaaagggagucggguucagauccccgaauccgg aguggcggagaugggcgccgcgaggcguccagugcgguaacgcgaccgau cccggagaagccggcgggagccccggggagaguucucuuuucuuugugaa gggcagggcgcccuggaauggguucgccccgagagaggggcccgugccuu ggaaagcgucgcgguuccggcggcguccggugagcucucgcuggcccuug aaaauccgggggagaggguguaaaucucgcgccgggccguacccauaucc gcagcaggucuccaaggugaacagccucuggcauguuggaacaauguagg uaagggaagucggcaagccggauccguaacuucgggauaaggauuggcuc uaagggcugggucggucgucggccggcgccuagcagccgacuuagaacug gugcggaccaggggaauccgacuguuuaauuaaaacaaagcaucgcgaag gcccgcggcggguguugacgcgaugugauuucugcccagugcucugaaug ucaaagugaagaaauucaaugaagcgcggguaaacggcgggaguaacuau gacucucuuaagguagccaaaugccucgucaucuaauuagugacgcgcau gaauggaugaacgagauucccacugucccuaccuacuauccagcgaaacc acagccaagggaacgggcuuggcggaaucagcggggaaagaagacccugu ugagcuugacucuagucuggcacggugaagagacaugagugaucguuuuu ucacugacccggugaggcgggggggcgagccccgaggggcucucgcuucu ggcgccaagcgcccggccgcgcgccggccgggcgcgacccgcuccgggga cagugccagguggggaguuugacuggggcgguacaccugucaaacgguaa cgcagguguccuaaggcgagcucagggaggacagaaaccucccguggagc agaagggcaaaagcucgcuugaucuugauuuucaguacgaauacagaccg ugaaagcggggccucacgauccuucugaccuuuuggguuuuaagcaggag gugucagaaaaguuaccacagggauaacuggcuuguggcggccaagcguu cauagcgacgucgcuuuuugauccuucgaugucggcucuuccuaucauug ugaagcagaauucaccaagcguuggauuguucacccacuaauagggaacg ugagcuggguuuagaccgucgugagacagguuaguuuuacccuacugaug auguguuguugccaugguaauccugcucaguacgagaggaaccgcagguu cagacauuugguguaugugcuuggcugaggagccaauggggcgaagcuac caucugugggauuaugacugaacgccucuaagucagaaucccgcccaggc ggaacgauacggcagcgccgcggagccucgguuggccucggauagccggu cccccgcgggguccggugcggagugcccuucguccugggaaacggggcgc ggccggagaggcggccgcccccucgcccgucacgcaccgcacguucgugg ggaaccuggcgcuaaaccauucguagacgaccugcuucugggucgggguu ucguacguagcagagcagcucccucgcugcgaucuauugaaagucagccc ucgacacaaggguuugu |
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PDB | 6ip6 HCV IRES Captures an Actively Translating 80S Ribosome. |
Resolution | 4.5 Å |
Binding residue (original residue number in PDB) | R5 V8 K15 R16 K18 F20 R22 Q24 D26 Y28 K30 N34 W35 R36 K37 R39 G40 I41 D42 N43 R44 R47 R48 F49 K50 G51 Q52 N57 I58 G59 Y60 G61 S62 N63 K64 H68 K76 K83 E98 I99 A100 H101 N102 S104 S105 K106 N124 A127 |
Binding residue (residue number reindexed from 1) | R4 V7 K14 R15 K17 F19 R21 Q23 D25 Y27 K29 N33 W34 R35 K36 R38 G39 I40 D41 N42 R43 R46 R47 F48 K49 G50 Q51 N56 I57 G58 Y59 G60 S61 N62 K63 H67 K75 K82 E97 I98 A99 H100 N101 S103 S104 K105 N123 A126 |
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Enzyme Commision number |
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