Structure of PDB 9cl9 Chain 2 Binding Site BS01

Receptor Information
>9cl9 Chain 2 (length=37) Species: 83333 (Escherichia coli K-12) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTVS
Ligand information
>9cl9 Chain CA (length=1543) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
gguuaagcgacuaagcguacacgguggaugcccuggcagucagaggcgau
gaaggacgugcuaaucugcgauaagcgucgguaaggugauaugaaccguu
auaaccggcgauuuccgaauggggaaacccaguguguuucgacacacuau
cauuaacugaauccauagguuaaugaggcgaaccgggggaacugaaacau
cuaaguaccccgaggaaaccgagauucccccaguagcggcgagcgaacgg
ggagcagcccagagccugaaucaguguguguguuaguggaagcgucugga
aaggcgcgcgauacagggugacagccccguacacaaaaaugcacaugcug
ugagcucgaugaguagggcgggacacgugguauccugucugaauaugggg
ggaccauccuccaaggcuaaauacuccugacugaccgauagugaaccagu
accgugagggaaaggcgaaaagaaccccggcgaggggagugaaaaagaac
cugaaaccguguacguacaagcagugggagcacgcuuaggcgugugacug
cguaccuuuuguauaaugggucagcgacuuauauucuguagcaagguuaa
ccgaauaggggagccgaagggaaaaguugcaggguauagacccgaaaccc
ggugaucuagccaugggcgacuuguggcuggucaaaccgggagauagcug
guucuccccgaaagcuauuuagguagcgccucgugaauucguuaucacgg
gagacacacggcggggcuaacguccgucgugaagagggaaacaacccaga
ccgccagcuaaggucccaaagucaugguuaagugggaaacgagcggaaga
uguaacggggcuaaaccaugcaccgaagcugcggcagcgacgcuuaugcg
uuguuggguaggggagcguucuguaagccugcgaaggugugcugugaggc
augcuggagguaucagaagugcgaaugcugacauaaguaacgauaaagcg
ggugaaaagcccgcucgccggaagaccaaggguuccuguccaacguuaau
cggggcagggugagucgaccccuaaggcgaggcguagucgaugggaaaca
gguuaauauuccuguacuugguguuacugguaacaucaaaucguacccca
aaccgacacgguggucagguagagaauaccaaggcgcuugagagaacucg
cgagacucagugaaauugaacucgcugugagaugcaguguacccgcggcu
ggcuguucgccaugaacgucgugagacaguucgccgugggcgcuggagaa
cugaggggggcugcuccuaguacgagaggaccggaguggacgcaucacug
guguucggguugucaugccaauggcacugcccgguagcuaaaugcggaag
agauaagugccacgaaacuugccccgagaugaguucucccugacccuuua
aggguccugaaggaacguugaagacgacgacguugauaggccgggugugu
aaguugagcuaaccgguacuaaugaaccgugaggcuuaaccuu
<<<<<.<<......<<<<<<<<<<<......<...<.<<....<<.....
.......<<.....((.>>......<<<<.....<<<)).....>>>...
......>>>>..........<........>.<<............>>...
..<<<<<<.........>>>>>>............<<<<...........
.......>>>>.................<<..................>>
.......<<....<........<.......<<<...<<.......<....
...>...(........<<......).>>...>>.....>>>.......>.
.....>..........<......................>......<<<.
.........>>>..>>.......>>.....>>..>..............<
.<.......>..>>..........<.<........>>.............
.....>>>>>>>>>>>..........<....................>..
.....<...........>.<<<<<<.....<<..<.<.........<...
............>..................>.>.>>...........<<
.........<<<.<<.<....>>>.>>>...........>>.........
......<<<.........<...>.......<<<<<<........>>>>>>
............<<<.......>>>..........<<........>>...
.<<<.<<<......<<..........((......................
.......>>.....))...........>>>>>>...<..<..........
.>..>......>>>...<.<<<.....<<........<<<<<<....>>>
>>>.....>>....>>>..>......>>>>>>................<<
<.........>>>................<<...<<<<<<..........
...>>>>>>......<<.....<....<........>.....>.......
<<.........>>......<<<<<<<<<>>>>>>>>>....>>..>>...
..................<<<.....>>>............<.....<<.
.>>...>...............<<.<..........>>>.....<<....
..................<<....>>.........>>............<
...........<<<<..<..............>.>>>>...<.<......
<.....<.....<<<......>>>.......>......>...>.>.....
.<....<<<.>>>.....>...............>......<<.<<<...
.>>>>>................................<<.<<<..<...
.........>..>>>...>>.............>.>>>>>>..
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB9cl9 50S ribosome assembly intermediates at low temperature reveal bound RluB
Resolution5.04 Å
Binding residue
(original residue number in PDB)
F18 A36 K37 G38 R39
Binding residue
(residue number reindexed from 1)
F10 A28 K29 G30 R31
External links
PDB RCSB:9cl9, PDBe:9cl9, PDBj:9cl9
PDBsum9cl9
PubMed
UniProtP0A7P5|RL34_ECOLI Large ribosomal subunit protein bL34 (Gene Name=rpmH)

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