Structure of PDB 6yws Chain 2 Binding Site BS01

Receptor Information
>6yws Chain 2 (length=123) Species: 367110 (Neurospora crassa OR74A) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DPRIINILRHFAVLSPKRIPPPLRFGRNRYLRHWTIHRAWLLFRRQQREQ
RERILMQQHQSMSNACEELRNTEGPGTRETGYLYRVAMLKNGVYGLKSIP
IEYASRALVETPGRQAWNHEWKR
Ligand information
>6yws Chain A (length=2820) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
guaauggauauaaagcuuauguuuauauauauauauaaguauauaaagag
acuacuaccaauagcuacacuauguauuaaggagaguauaacuuaauuua
uguuuaugauagagguuaucaacauaugaacucuuagagaaauuacuuaa
uaaacgaagugaauugaaauaucuuauuaacuucaggaaaagaaaucaaa
cgagauucuaugauuagugugaacgaaaauagagcagccuauuaaaauaa
guaaaauggcuuuaaagcuguuugaauauuguggggaaccuuccucaaag
gcuaaauauaauacaugaguuacagagaaaaguaccgugagggaaagcuu
ugaaauaguaguuuuauaagcagcucaagcaauaagaaagcgagagcgua
ccuuuugcauaaugggucaccaaguuaauuuuagaugcgagcgaauuaga
ugugcauaguuaaaccgaucauuaaaauaaugaauagugucuaaaguuag
acccgaagccuggugaucuuacuauagucaggacuauaaagguccgaacg
gguuaucguugcaaagauauccgaagaacuaugguaagcgagugaaagac
aacacugacuaggauagcugguuuucugcgaaaccuauaauaguaggcaa
uuuaaguaacaucuuaguagguacagaacuuaaucucagacaagauguag
auuuucauaccuagguaugaaaugcauuuuuuuuuguauacaucggggga
uauuuuaucggugaguauguagacucggaaugacaaagaugaaucuugaa
uaaucagacauagaaugauaagguuguaugucaaaagggaaacagcccag
aacaagaguuaagguuccaaaauuauuauuaagugaaauaaagaaaguuu
uuauauaagucgacaagaagaugggcuuggaagcagccauaauuuaaaga
ucucguaacagagcacuuguuaaaucuuaaaagcaucgaaaauuuaacgg
aucuaaauaauauaccgaaaccuuguccauauguaacauuaguaauaaua
uuaauguuauuugaugggguagcagaacguugagugaaucuuagauuuuu
uuuuuauaacuaaauauagaugauaacucaagugagaauggugacaugag
uaacaaaaaagaguuuaagguaccuaaaagguaucuuagagucucgccua
aagcuuauggcuacgucaaguaacggccucuaaguuuauaaucugaagau
uaugacgaugagaaaacuuugguaccaacauuuaaaagugaaaauugugc
aggaaggauaaaccguaccuagaaucugaaacaaguaagcuaguagagaa
uacgaaggcgugaaugagauaacaaucauaaaggaacucggcaaacuaac
uaccguaacuuagggauaaggagagcucauuagucucgaacgaguaaaaa
ggaagaagcauggaauauuguuguacgacuguuuaauuaaaacaaagcac
uuugcaaaaagacgauaagucuaaguauugagugugauuucugcccgaug
ccggcugguuaacgaauuuucuaaauugaaaaaaaauuugguuucagagg
aacccccgguuaauggcggccgguccuaagguagcgaaaugccuuggccg
uuaaaugcggucuugcaugaaugauguaacgauacaacagcugucucuau
gauugacucagugaaauuggaauaacugugcagauacaguuuaccucuag
uuagacgagaagacccuaugcagcuuuacuguuacuaauuauugaauacg
auucugaaaauuuccaguguaaaagguaaucgauaagauauaauugaaac
accuuuauuuuucuaucguauuauuaaaccuuaaauuaaggaacaauugu
uagaagacaguuuaugcggggcacaggccccauaaagaguaaaugggugu
gucuaaaauguuugcaauuuuuuauaguauauaucaaaucaucuuuaugc
uauucauagaccuuggguacaguauaaaaauuauauauguauuaauuuac
auauauuuuuucuaagaaauuagguaagauuuuguuuauagagaaauuag
auguaaaaaaaaaaucuuaugagggcggauccgcuucuaauauuuuuuug
uaguuauuauuauaauaauaaucauguuuauuacuuaaaaagcuuaaugg
cuuaaucuugccuuacuguuugauuaacaacaaaucuuacagucgcguaa
gcggggcauaggaucacaagauacaaaaaggaaagaucuuggauuuuugg
aaaagcuacgcuagggauaacaggcuaauuugcgcaagaguguacaaaau
gagugcgcgguuuggcaccucggcuugacuaauccucauggaugcagaaa
cuauguaggguacgacuguucgucgauuaaaaaguuacaugagcuggguu
aaauacgucgugagacaguaugguuucuaucuucuagagggaauuagaau
auaauaaggauuaaccuuuguacgaaaggaacaugggguacuauuguuaa
caguuuuauuaaccucugguuuaccuguuguuuaugugccuuagggaugu
uaccgucacuugaguaaauacaauagcauaagcauggcaggaaagcuaag
uuagucaaaaauaagugcugaaagcauauaggcacgaaauuuaccuuaag
auauuucuuaaauauacguaagaaaauauuacguuaauaggcuuaguuug
uaauaaucuagagauuuuaaggaacuaaguacuaauuuuauaaaaaacug
aaugauuaauauaucuuaca
<<<<..<<<<<<.......<<<<<<<<<..>>>>...<<<.......<<<
<<<<<<<......((.....<<<<<<<<<.<<<<<<.....>>.....<<
<<<<................>>>>>>....>>>>..<<....>>......
....<<<<<<.....<<....>>......>>>>>.>.........<<...
.>>..<<<<<<.....<<....>>....>>>>>>..((............
...<<<<<<<<....>>>>>>>>........<<<<<..<<<<>>>>>...
))......>>>>>>>>>.................<<....>>....))..
.....>>>>>>>>>>.......<<<<..<<.........>>..>>>>...
<............>.<<<<<<....<<<<<<<<<<<<<..<<<.......
..>>>...<......>..<<<<<.....>>>>>...>>>>>>>>>>>>>.
.<<.<..<<<<<<<....<<<<<<<<<<..<<<<<....>>.>>>...<<
<..<<<<........>>>>.>>>....>>>>>>>>>>....<<.....>>
.......>>>>>>.>..>.>>..<<<<<<....<<<<<....>>>>>..<
<<<<<<...<<<<<<.<<.....<<<...<..<<<<<<.<<<<<<<<..<
..<<<<<<<<<..>>>>>>>>>>.>>>>.....>>>>.....<<<<.<<<
..>>>..>>>>>>>>.>>..>..>>.>.....>>.>>>>>>...>>>>>>
>.....<<<<<<.<<<......>>>.>>>>>>....<<<......>>>..
.<<<<<.<<...<<<(((.....<<<<<<.....<<......<<..<<<<
<<<........<<<<<<.<....<<<<.......>>>>....>.......
.<<<......>>>..>>>>>>......>>>>>>>.>>...........))
)>>...>>>>>>.>>>...>>>>>>><<<<..<<<<<<<<<<<<....>>
>>>>>>>>>>...>>>>....>>>>>>..<<<<<<..<<<....<<..<<
..<<...>>..>>..>>....>>>.>>>>>>........>>>>>><....
..<<.....<<<.<<<<<<<<<<<.....>>>>>>>>>>>.>>><<<<<.
..<<<<<.<<........((...<<<.<<<...<<<.<<<<<<<..>>>>
>>>>>>...>>>....)).........<<<.<<..(((((..>>.>>>..
............>>>..>>......<<......>>>>>>>..<<<.....
>>>..>>>>>....<<<<....<<<<<<<<.<<................<
<.<<....<<..>>.....>>>>..<<<.<<..<<<<<..>>>>..>.>>
.>.>>.............<<<<<<<<<..<<<.........>>>..<<<<
<<.......<<<<.....>>>>.......>>>>>>....<<.<<<..<<<
<<<<..<<....<.......<<<<<<<.......>>>>>>>.......>.
...>>>>>>>..>>>>><<<..>>>........<...........<<<<<
<.....>>>>>>.....>....>>.....>>.>>>>>>>.....>>.>>>
>>>>>.>>>>>>.....>.....<<<<<........>>>>>..<<<<<<<
..<<<.[[......<<<<.[[<<<<..<<<<<..<<<<<.<<..<<<<<<
<<...<<<<<...........<<<<<<.<<<.....>>>...........
>>>>>>..>>>>>.>>>>>>>>......<<<<.....>>>>....>>.>>
>>>...>>>>>...<<.......>>.<<<<<<...........>>>>.>>
..<<.....<.......<<<..<<<<...>>>>..>>>.>..........
<<<<<<.......>>>>>>.............<<<<<<<<<......>>>
>>>>>>................<<<<<<<.....<<<<.........>>>
>.<<<<..<<<<<<<.<<<.<<.<<<<<..>>>>>>>>>>.>>>.>>>>.
..<<<<<<<<<..>>>>>>>>>........>>>>......<<<...(((>
>>...>>>>>>>...<<<<..<<<.........>>>..>>>>.<<<....
>>>.>>))).......<<<<<<.(...>>>>...)>>>>>>.........
...>>>>..]]>>>>.......<<<<.<...<<<<<...<.........>
...>>>>>....>>>>.>..<<<<.<<<<<...<<<<<<<<.........
>>>>>..>>>..<<<<.....>>>>.......>>>>..>...>>>.>...
..<<<<<<<....>>>.>>>>....]]..>>>.>>>>>>>.....<<<<<
<...<<<<<...<<<<<...............>.>>......<<<<<..>
>>>>>>.<<<<<<...<<<<...<<<<<<<<<<<<<<.<<<..>>>...<
<<<...)))))..>>>>........>>>>>>>>>..>>>>>...>>>>.>
>>>>>..<<<.<..<<<<<...........>>>>>...>>>>.>>>>>..
.>>>.>>>....<<<.<<<<<.......>>>>>....<<<<<<<<<<<<.
....<<<<....>>>>....>>>.>>>>>>.>>>.....>>>....>>>>
>>>>.....>>>>>>>>>>.
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6yws Analysis of translating mitoribosome reveals functional characteristics of translation in mitochondria of fungi.
Resolution2.74 Å
Binding residue
(original residue number in PDB)		L255 R256 F258 V260 P263 R265 P268 L270 R271 F272 G273 R274 N275 R276 Y277 H284 R285 L288 L289 R291 R292 R300 M303 Q304 Q307 G323 T324 R325 R332 K337 N338
Binding residue
(residue number reindexed from 1)		L8 R9 F11 V13 P16 R18 P21 L23 R24 F25 G26 R27 N28 R29 Y30 H37 R38 L41 L42 R44 R45 R53 M56 Q57 Q60 G76 T77 R78 R85 K90 N91
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Nov 15 15:26:38 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6yws', asym_id = '2', bs = 'BS01', title = 'Analysis of translating mitoribosome reveals fun...eristics of translation in mitochondria of fungi.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6yws', asym_id='2', bs='BS01', title='Analysis of translating mitoribosome reveals fun...eristics of translation in mitochondria of fungi.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003735,0032543', uniprot = '', pdbid = '6yws', asym_id = '2'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0032543', uniprot='', pdbid='6yws', asym_id='2')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>