Structure of PDB 3j6b Chain 2 Binding Site BS01

Receptor Information
>3j6b Chain 2 (length=113) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SLSPLAQRVVTQLSVMSASRKQPKLLKLAREDLIKHQTIEKCWSIYQQQQ
RERRNLQLELQYKSIERSMNLLQELSPRLFEAANASEKGKRFPMEMKVPT
DFPPNTLWHYNFR
Ligand information
>3j6b Chain A (length=2713) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
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auggaguauaauaauuaaauuuaaauuuaauauaacuauuaauagaaggu
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cuaacuaugauaagauggauaaacgaucgaacagguugauguugcaauau
caucugauuaauugugguuaguagugaaagacaaaucugguuugcagaua
gcugguuuucuaugaaauauauguaaguauagccuuuauaaauaauaauu
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ggaacuaguuuuuuaauaauauuaaaucucgaaauauuuaauuauauaua
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cccagauuaagauauaaaguuccuaauaaauaauaagugaaauaaauauu
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aaaccuuuucaccuaaaacauaagguuuaacuauaaaaguacggccccua
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agguauguaaguagagaauaugaaggugaauuagauaauuaaagggaagg
aacucggcaaagauagcucauaaguuagucaauaaagaguaauaagaaca
aaguuguacaacuguuuacuaaaaacaccgcacuuugcagaaacgauaag
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uauuuaacgauaauuuaauuaaauuuagguaaauagcagccuuauuauga
ggguuauaauguagcgaaauuccuuggccuauaauugaggucccgcauga
augacguaaugauacaacaacugucuccccuuuaagcuaagugaaauuga
aaucguagugaagaugcuauguaccuucagcaagacggaaagacccuaug
cagcuuuacuguaauuagauagaucgaauuauuguuuauuauauauaaug
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uauuauauauuauaagagacaaucucuaauugguaguuuugauggucauu
aucagcaaaaguaucugaauaaguccauaaauaaauauauaaaauuauug
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auugaauauauuuuaguaauagauaaaaauauguacaguaaaauuguaag
gaaaacaauaauaacuuucucggaaagaauuaaauuaauauaaugguaua
acugugcgauaauuguaacacaaacgagugaaacaaguacguaaguaugg
cauaaugaacaaauaacacugauuguaaagguuauugauaacgaauaaaa
guuacgcuagggaaggguaauauagcgaaagaguagauauuguaagcuau
guuugccaccuucgacucaacauuuccucuugguuguaaaagcuaagaag
gguuugacuguucgucaauuaaaauguuacgugaguuggguuaaauacga
ugugaaucaguaugguuccuaucugcugaaggaaauauuaucaaauuaaa
ucucauuauuaguacgcaaggaccauaaugaaucaacccaugguguaucu
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Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3j6b Structure of the yeast mitochondrial large ribosomal subunit.
Resolution3.2 Å
Binding residue
(original residue number in PDB)		V43 L46 S47 S50 S52 R53 Q55 L58 K60 Q81 Q82 R84 E85
Binding residue
(residue number reindexed from 1)		V10 L13 S14 S17 S19 R20 Q22 L25 K27 Q48 Q49 R51 E52
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0032543 mitochondrial translation
Cellular Component
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0005762 mitochondrial large ribosomal subunit
GO:0005840 ribosome
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:3j6b, PDBe:3j6b, PDBj:3j6b
PDBsum3j6b
PubMed24675956
UniProtP36527|RM28_YEAST Large ribosomal subunit protein mL40 (Gene Name=MRPL28)

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