Structure of PDB 1rdj Chain 2 Binding Site BS01

Receptor Information

>1rdj Chain 2 (length=112) Species: 10117 (Rattus rattus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

KKYFMSSVRRMPLNRAKALCSELQGTVATPRNAEENRAIQNVAKDVAFLG
ITDQRTENVFEDLTGNRVRYTNWNEGEPNNVGSGENCVVLLTNGKWNDVP
CSDSFLVVCEFS

Ligand information

Ligand ID

MFB

InChI

InChI=1S/C7H14O5/c1-3-4(8)5(9)6(10)7(11-2)12-3/h3-10H,1-2H3/t3-,4+,5+,6-,7-/m0/s1

InChIKey

OHWCAVRRXKJCRB-XUVCUMPTSA-N

SMILES

Software	SMILES
OpenEye OEToolkits 1.5.0	C[C@H]1[C@H]([C@H]([C@@H]([C@H](O1)OC)O)O)O
OpenEye OEToolkits 1.5.0	CC1C(C(C(C(O1)OC)O)O)O
ACDLabs 10.04	OC1C(O)C(O)C(OC1OC)C
CACTVS 3.341	CO[CH]1O[CH](C)[CH](O)[CH](O)[CH]1O
CACTVS 3.341	CO[C@H]1O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]1O

Formula

C7 H14 O5

Name

methyl beta-L-fucopyranoside;
BETA-L-METHYL-FUCOSE;
methyl 6-deoxy-beta-L-galactopyranoside;
methyl beta-L-fucoside;
methyl L-fucoside;
methyl fucoside

PDB chain

1rdj Chain 2 Residue 1 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	1rdj Structural analysis of monosaccharide recognition by rat liver mannose-binding protein.
Resolution	1.8 Å
Binding residue (original residue number in PDB)	E190 N192 E198 N210
Binding residue (residue number reindexed from 1)	E77 N79 E85 N97
Annotation score	1
Binding affinity	MOAD: Ki=21.7mM

Enzymatic activity

Enzyme Commision number

External links

PDB	RCSB:1rdj, PDBe:1rdj, PDBj:1rdj
PDBsum	1rdj
PubMed	8557671
UniProt	P08661\|MBL2_RAT Mannose-binding protein C (Gene Name=Mbl2)

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