Structure of PDB 7a0s Chain 1 Binding Site BS01

Receptor Information
>7a0s Chain 1 (length=49) Species: 243230 (Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PRIIVKMESSAGTGFYYTTTKNRRNTQAKLELKKYDPVAKKHVVFREKK
Ligand information
>7a0s Chain X (length=2699) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ggucaagauaguaaggguccacgguggaugcccuggcgcuggagccgaug
aaggacgcgauuaccugcgaaaagccccgacgagcuggagauacgcuuug
acucggggauguccgaauggggaaacccaccucguaagagguauccgcaa
ggaugggaacucagggaacugaaacaucucaguaccugaaggagaagaaa
gagaauucgauuccguuaguagcggcgagcgaacccggaucagcccaaac
cgaaacgcuugcguuucgggguuguaggaccaucaagccgaaguggcugg
aaagcuacaccucagaaggugagaguccuguaggcgaacgagcccugagu
aggucguuguucgugaaacgaugacugaauccgcgcggaccaccgcgcaa
ggcuaaauacucccagugaccgauagcgcauaguaccgugagggaaaggu
gaaaagaaccccgggaggggagugaaagagaaccugaaaccguggacuua
caagcagucauggcaccuuaugcguguuauggcgugccuauugaagcaug
agccggcgacuuagaccugacgugcgagcuuaaguugaaaaacggaggcg
gagcgaaagcgaguccgaauagggcggcauuaguacgucgggcuagacuc
gaaaccaggugagcuaagcaugaccagguugaaacccccgggggcggagg
accgaaccggugccugcugaaacagucucggaugaguuguguuuaggagu
gaaaagcuaaccgaaccuggagauagcuaguucuccccgaaauguauuga
gguacagccucggauguugaccauguccuguagagcacucacaaggcuaa
aaccuuaugaaacuccgaaggggcacgcguuuaguccgggagugaggcug
cgagagcuaacuuccguagccgagagggaaacaacccagaccaucagcua
aggucccuaaaugaucgcucagugguuaaggaugugucgucgcauagaca
gccaggagguuggcuuagaagcagccacccuucaaagagugcguaauagc
ucacuggucgagugacgaugcgccgaaaaugaucggggcucaagugaucu
accgaagcuauggauucaacucggaguugucugguaggggagcguucagu
ccgcggagaagccauaccggaaggagugguggagccgacugaagugcgga
ugccggcaugaguaacgauaaaagaagugagaaucuucuucgccguaagg
acaaggguuccuggggaagggucguccgcccagggaaagucgggaccuaa
ggugaggccgaacggcgcagccgauggacagcaggucaagauuccugcac
cgaucauguggagugauggagggacgcauuacgcuauccaaugccaagcu
auggcuaugcugguugguacgcucaagggcgaucgggucagaaaaucuac
cggucugccucagacguaucgggagccgaaguuggaaacgcgacggugcc
aagaaaagcuucuaaacguugaaacaugauugcccguaccgcaaaccgac
acagguguccgagugucaaugcacuaaggcgcgcgagagaacccucguua
aggaacuuugcaaucucaccccguaacuucggaagaagggguccccacgc
ugcguggggcgcagugaauaggcccaggcgacuguuuaccaaaaucacag
cacucugccaacacgaacaguggacguauagggugugacgccugcccggu
gccggaaggucaaguggagcggugcaagcugcgaaaugaagccccgguga
acggcggccuaagguagcgaaauuccuugucggguaaguuccgaccugca
cgaaaggcguaacgaucugggcgcugucucaacgagggacucggugaaau
ugaauuggcuguaaagaugcggccuacccguagcaggacgaaaagacccc
guggagcuuuacuauagucuggcauugggauucggguuucuagaaacuug
gauuucuaaccugaaaaaucacuuucggggaccgugcuuggcggguaguu
ugacuggggcggucgccucccaaaauguaacggaggcgcccaaaggucac
cucaagacgguuggaaaucgucuguagagcgcaaagguagaagguggcuu
gacugcgagacugacacgucgagcagggaggaaacucgggcuuagugaac
cggugguaccguguggaagggccaucgaucaacggauaaaaguuaccccg
gggauaacaggcugaucucccccgagaguccauaucggcggggagguuug
gcaccucgaugucggcucgucgcauccuggggcugaagaaggucccaagg
guugggcuguucgcccauuaaagcggcacgcgagcuggguucagaacguc
gugagacaguucggucucuauccgcuacgggcgcaggagaauugagggga
guugcuccuaguacgagaggaccggagugaacggaccgcuggucucccug
cugucguaccaacggcacaugcaggguagcuauguccggaacggauaacc
gcugaaagcaucuaagcgggaagccagccccaagaugaguucucccacug
aagguaagacucccggaagaccaccggguuaagaggccaggcgugcacgc
auagcaauguguucagcggacuggugcucaucagucgaggucuugacca
<<<<<<<<......<<<<<<<<<<<....<<<..<<<<<<<<<<<<....
..<<<<<<.[...((.>>>.....<<<<<<...<<.))...]..>>....
..>>>>>>...>>>....<<<....>>><<<<......>>>><<<<....
>>>>>>...<<<<<<.....<<....>>......>>>>>.>.........
<<....>>...<<<<......<<.....>>.....>>>>...<<<....<
<<<<<<<....>>>>>>>>......<<.....<<..<<<...<<<<<...
...>>>>>((......<<<.....))>>>...>>>....>>...>>....
.<<<<<<<<.........>>>>>>>>......<<<<<..((((>>>>>..
>>>......>>.>>>>>>.>>..............<<....>>....>>.
........<<<<....>>>>.............>....>>>>>>>>>>>.
......<<<<<<<<<<.......>>>>>>>>>>...<.<........>.>
.<<<<<<....<<<.<<<<<<<<<<..<<<...<<<....>>>...>>>.
..<<....>>...<<......>>.........>>>>>>>>>>>>>..<<.
<...<<<<<<.....<<<<<<<<<..<<<.....<<<<..>>>>......
>>>...<<<<.<.<<........>>.>>>>>....>>>>>>>>>...<<<
.....>>>......>>>>>>......>.>>..<<<<<<....<<<<<...
.>>>>><<<<<<<<<...<<<..<<<<<<...<<<...<<<.<<<<....
..>>>>.>>>..>>.>...>>>>>>...>>>..>>>>>>>.>>..<<<<<
<<.<<......>>.>>>>>>>....<<<......>>>...<<<<.<<<..
.<<<(((.....<<<<<<...........<<..<<<<<<<<<........
<<<<<.<<.....<<.......>>.....>>..........<......>.
...>>>>>....>>>>>>>>>.>>..........)))......>>>>>>.
>>>...>>>>>>><..<<<<<...>>>>>..>....>>>>>><<<<<<<<
<.<<......<<<<<.<<....>>.>>>>>...>>.>>>>>>>.>>....
.>>>>>><......<<.....<<<<<<.......>>>>>><<<<....<<
<<<.<<...<<<<<<...<<.....>>.>>>>>>....((<<<<.<<...
<<<...<<<<..>>>>...>>>...>>...<<<<<........>>>>>))
<<<<<<<<<...<<...<<<<....<<<<..<<<..<<<<<.<<<<.<<.
..[[....>>>>>><<<<<<<.<<..<<<<<<<<<<...<<.....>>.>
>>>>>.>>>>..>>>>>>>>>...<.>....>>>>>...>>>...>>>>.
........>>>>...>>......>>>>>>>>>>>>>..>>.....<<...
...>>>>>>>.<<<<<....>>>>>..>>>>..<<<<....<<<<<<<<.
<<.........<.....<<<<<....<<..>>.....>>>>><<<<<<<<
.>>>>>>>>............<<<<<<<<<..<<...........>>..<
<<<<<<.....<<<.....>>>.......>>>>>>>.<<<<<.<<<..<<
<<<<<..<<<...<<...<<<<<....>>>>>...>>...>>>>>>>>..
>>>>>...........<...........<<<<<<.....>>>>>>.....
>....>>>>>..>>.>>>>>>>..>..>>.>>>>>>>>.>>>>>>.....
>.....<<<<<........>>>>>..<<<<<<<<.<<<.........<<<
<.<<<<<<..<<<<<.<<<.<<<<<.<<<<<<<.<<<<......>>>>.>
>>>>>>...<<<<<<.......>>.>>>>....>>>>>.>>>..>>>>>.
.<<<<.....>>>><<<<<<...........>>>>>>..<<...<<<<<<
<...<<<<<<.......>>>>>>.....<....(((.>....>>>>>>>.
..<<<<..<<<......>>>..>>>>.<<<....>>>.>>))).......
<<<<<<<.<<..))))..>>>>>>>>>.............>>>>..>>>>
>>.......<<<<.<.<<<<<<.<.<<.......>>..>>>>>>>...>>
>>.>.......<<<<<.<<<<<<..<<<<<<<<<......>>>>>>>..>
>.<<<<<.....>>>>>.....>>>>>..>...>>>.>>....<<<<<<<
....>>>.>>>>........>>>>>>>>>>>....<<<<<<<...<<<<.
.<<<<<<<...............>>>>>>>.<<<<<...<<<<...<<<<
<<<<<<<.]].>>>>>>...>>>>>...>>>>.>>>>>....<<....<<
<<.............>>>>....>>..>>>>.......>>>>>>>..<<.
.>>....<<<<<<<<<.......>>>>>....<<<<<<<<.<<<....<<
<<<....>>>>>...>>>..>>>>>.>>>...>>>>....>>>>>>>>.
Receptor-Ligand Complex Structure
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PDB7a0s Ribosome-binding and anti-microbial studies of the mycinamicins, 16-membered macrolide antibiotics from Micromonospora griseorubida.
Resolution3.22 Å
Binding residue
(original residue number in PDB)
I8 I9 F20 Y21 T24 N27 N30 E36 K39
Binding residue
(residue number reindexed from 1)
I3 I4 F15 Y16 T19 N22 N25 E31 K34
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:7a0s, PDBe:7a0s, PDBj:7a0s
PDBsum7a0s
PubMed34417608
UniProtQ9RSS4|RL33_DEIRA Large ribosomal subunit protein bL33 (Gene Name=rpmG)

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